Parallel processing of biological sequence comparison algorithms

Parallel Processing of Biological Sequence Comparison Algorithms

10.21236/ada202407 ◽

1988 ◽

Author(s):

Nolan G. Gore ◽

Elizabeth W. Edmiston ◽

Joel H. Saltz ◽

Roger M. Smith

Keyword(s):

Parallel Processing ◽

Sequence Comparison ◽

Biological Sequence ◽

Supercomputers and biological sequence comparison algorithms

Computers and Biomedical Research ◽

10.1016/0010-4809(89)90071-2 ◽

1989 ◽

Vol 22 (6) ◽

pp. 497-515 ◽

Cited By ~ 4

Author(s):

Nolan G. Core ◽

Elizabeth W. Edmiston ◽

Joel H. Saltz ◽

Roger M. Smith

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

IEEE International. 2005 Proceedings of the IEEE Workload Characterization Symposium, 2005. ◽

Parallel processing in biological sequence comparison using general purpose processors

10.1109/iiswc.2005.1526005 ◽

2006 ◽

Cited By ~ 4

Author(s):

F. Sanchez ◽

E. Salami ◽

A. Ramirez ◽

M. Valero

Keyword(s):

Parallel Processing ◽

Sequence Comparison ◽

General Purpose ◽

Biological Sequence ◽

General Purpose Processors

An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop

The Journal of Supercomputing ◽

10.1007/s11227-016-1835-3 ◽

2016 ◽

Vol 73 (4) ◽

pp. 1467-1483 ◽

Cited By ~ 14

Author(s):

Giuseppe Cattaneo ◽

Umberto Ferraro Petrillo ◽

Raffaele Giancarlo ◽

Gianluca Roscigno

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

Alignment Free ◽

Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms

The Computer Journal ◽

10.1093/comjnl/bxx090 ◽

2017 ◽

Vol 61 (5) ◽

pp. 687-713 ◽

Cited By ~ 3

Author(s):

Edans F O Sandes ◽

George L M Teodoro ◽

Maria Emilia M T Walter ◽

Xavier Martorell ◽

Eduard Ayguade ◽

...

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

Comparison Algorithms ◽

Number Of Cells

A multiple task allocation framework for biological sequence comparison in a grid environment

Proceedings 20th IEEE International Parallel & Distributed Processing Symposium ◽

10.1109/ipdps.2006.1639529 ◽

2006 ◽

Cited By ~ 2

Author(s):

A. Boukerche ◽

M.S. Sousa ◽

A.C.M.A. de Melo

Keyword(s):

Task Allocation ◽

Sequence Comparison ◽

Biological Sequence ◽

Grid Environment ◽

Multiple Task

Proceedings 13th International Parallel Processing Symposium and 10th Symposium on Parallel and Distributed Processing. IPPS/SPDP 1999 ◽

Parallel biological sequence comparison using prefix computations

10.1109/ipps.1999.760546 ◽

2003 ◽

Cited By ~ 3

Author(s):

S. Aluru ◽

N. Futamura ◽

K. Mehrotra

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

Significance levels for biological sequence comparison using non-linear similarity functions

Bulletin of Mathematical Biology ◽

10.1016/s0092-8240(88)90017-1 ◽

1988 ◽

Vol 50 (1) ◽

pp. 77-92 ◽

Cited By ~ 1

Author(s):

S ALTSCHUL ◽

B ERICKSON

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

Similarity Functions ◽

Non Linear ◽

Significance Levels ◽

2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum ◽

Biological Sequence Comparison on Hybrid Platforms with Dynamic Workload Adjustment

10.1109/ipdpsw.2013.28 ◽

2013 ◽

Cited By ~ 4

Author(s):

Fernando Machado Mendonca ◽

Alba Cristina Magalhaes Alves de Melo

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

Executing a biological sequence comparison application on a federated cloud environment

2012 19th International Conference on High Performance Computing ◽

10.1109/hipc.2012.6507500 ◽

2012 ◽

Cited By ~ 5

Author(s):

Alessandro Ferreira Leite ◽

Alba Cristina Magalhaes Alves de Melo

Keyword(s):

Sequence Comparison ◽

Biological Sequence ◽

Cloud Environment ◽