A review of protein–protein interaction network alignment: From pathway comparison to global alignment

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2020.09.011 ◽

2020 ◽

Vol 18 ◽

pp. 2647-2656

Author(s):

Cheng-Yu Ma ◽

Chung-Shou Liao

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Global Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Computational Methods for Protein–Protein Interaction Network Alignment

Recent Advances in Biological Network Analysis ◽

10.1007/978-3-030-57173-3_3 ◽

2021 ◽

pp. 45-63

Author(s):

Ruiquan Ge ◽

Qing Wu ◽

Jinbo Xu

Keyword(s):

Computational Methods ◽

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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ACOGNA: An efficient method for protein-protein interaction network alignment

2016 Eighth International Conference on Knowledge and Systems Engineering (KSE) ◽

10.1109/kse.2016.7758021 ◽

2016 ◽

Cited By ~ 1

Author(s):

Ha Tran Ngoc ◽

Huan Hoang Xuan

Keyword(s):

Protein Interaction ◽

Efficient Method ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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The protein-protein interaction network alignment using recurrent neural network

Medical & Biological Engineering & Computing ◽

10.1007/s11517-021-02428-5 ◽

2021 ◽

Author(s):

Elham Mahdipour ◽

Mohammad Ghasemzadeh

Keyword(s):

Neural Network ◽

Recurrent Neural Network ◽

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Algorithms for global protein–protein interaction network alignment

Network Modeling Analysis in Health Informatics and Bioinformatics ◽

10.1007/s13721-014-0065-y ◽

2014 ◽

Vol 3 (1) ◽

Cited By ~ 2

Author(s):

Sonia Farhana Nimmy ◽

Mohammad Shohelur Rahman

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Protein-protein Interaction Network Alignment: Algorithms and Tools

Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics ◽

10.1002/9781118567869.ch22 ◽

2013 ◽

pp. 431-448

Author(s):

VALERIA FIONDA

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Alignment Algorithms ◽

Protein Protein Interaction Network

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Genetic Algorithm for Optimizing Global Alignment of Protein-Protein Interaction Network

2019 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) ◽

10.1109/cibcb.2019.8791492 ◽

2019 ◽

Author(s):

Qanita Bani Baker ◽

Manar K Al-Bataineh

Keyword(s):

Genetic Algorithm ◽

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Global Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Protein-Protein Interaction Network Alignment by Quantitative Simulation

2008 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2008.72 ◽

2008 ◽

Cited By ~ 2

Author(s):

Perry Evans ◽

Ted Sandler ◽

Lyle Ungar

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Global multiple protein-protein interaction network alignment by combining pairwise network alignments

BMC Bioinformatics ◽

10.1186/1471-2105-16-s13-s11 ◽

2015 ◽

Vol 16 (S13) ◽

Cited By ~ 6

Author(s):

Jakob Dohrmann ◽

Juris Puchin ◽

Rahul Singh

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Multiple Protein ◽

Protein Protein Interaction Network

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Indexing a protein-protein interaction network expedites network alignment

BMC Bioinformatics ◽

10.1186/s12859-015-0756-0 ◽

2015 ◽

Vol 16 (1) ◽

Cited By ~ 7

Author(s):

Md Mahmudul Hasan ◽

Tamer Kahveci

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Network Alignment ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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Faculty Opinions recommendation of Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020099.229440 ◽

2004 ◽

Author(s):

Benoit Coulombe

Keyword(s):

Protein Interaction ◽

Protein Interaction Network ◽

Interaction Network ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Network

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