scholarly journals Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP–DNA Complex: Recognition of Pyrimidine-Purine and Purine-Purine Steps

2006 ◽  
Vol 357 (1) ◽  
pp. 173-183 ◽  
Author(s):  
Andrew A. Napoli ◽  
Catherine L. Lawson ◽  
Richard H. Ebright ◽  
Helen M. Berman
Keyword(s):  
Dna Sequence ◽  
Kink Site ◽  
Dna Complex ◽  
Indirect Readout

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking

2001 ◽  
Vol 314 (1) ◽  
pp. 75-82 ◽  
Author(s):  
Shengfeng Chen ◽  
Angelo Gunasekera ◽  
Xiaoping Zhang ◽  
Thomas A Kunkel ◽  
Richard H Ebright ◽  
...  
Keyword(s):  
Dna Binding ◽  
Dna Sequence ◽  
Binding Specificity ◽  
Dna Binding Specificity ◽  
Kink Site ◽  
Dna Complex ◽  
Indirect Readout

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking

2001 ◽  
Vol 314 (1) ◽  
pp. 63-74 ◽  
Author(s):  
Shengfeng Chen ◽  
Jaroslav Vojtechovsky ◽  
Gary N Parkinson ◽  
Richard H Ebright ◽  
Helen M Berman
Keyword(s):  
Dna Binding ◽  
Dna Sequence ◽  
Binding Specificity ◽  
Dna Binding Specificity ◽  
Kink Site ◽  
Dna Complex ◽  
Indirect Readout

Water-mediated interactions in the CRP–cAMP–DNA complex: Does water mediate sequence-specific binding at the DNA primary-kink site?

2008 ◽  
Vol 32 (3) ◽  
pp. 149-158 ◽  
Author(s):  
Bryan M.B. VanSchouwen ◽  
Heather L. Gordon ◽  
Stuart M. Rothstein ◽  
Yuto Komeiji ◽  
Kaori Fukuzawa ◽  
...  
Keyword(s):  
Specific Binding ◽  
Kink Site ◽  
Dna Complex

scholarly journals Early Interrogation and Recognition of DNA Sequence by Indirect Readout

Structure ◽  
2008 ◽  
Vol 16 (12) ◽  
pp. 1828-1837 ◽  
Author(s):  
Elizabeth J. Little ◽  
Andrea C. Babic ◽  
Nancy C. Horton
Keyword(s):  
Dna Sequence ◽  
Indirect Readout

Indirect Readout of DNA Sequence by Papillomavirus E2 Proteins Depends Upon Net Cation Uptake

2006 ◽  
Vol 358 (1) ◽  
pp. 224-240 ◽  
Author(s):  
Dukagjin M. Blakaj ◽  
Chandramohan Kattamuri ◽  
Sergei Khrapunov ◽  
Rashmi S. Hegde ◽  
Michael Brenowitz
Keyword(s):  
Dna Sequence ◽  
Cation Uptake ◽  
Indirect Readout

scholarly journals DNA sequence-specific recognition by a transcriptional regulator requires indirect readout of A-tracts

2007 ◽  
Vol 35 (10) ◽  
pp. 3252-3261 ◽  
Author(s):  
Jesús Mendieta ◽  
Laura Pérez-Lago ◽  
Margarita Salas ◽  
Ana Camacho
Keyword(s):  
Dna Sequence ◽  
Transcriptional Regulator ◽  
Specific Recognition ◽  
Indirect Readout

scholarly journals The Role of the Minor Groove Substituents in Indirect Readout of DNA Sequence by 434 Repressor

2003 ◽  
Vol 278 (15) ◽  
pp. 12955-12960 ◽  
Author(s):  
Steven A. Mauro ◽  
David Pawlowski ◽  
Gerald B. Koudelka
Keyword(s):  
Dna Sequence ◽  
Minor Groove ◽  
Indirect Readout ◽  
434 Repressor
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