A Branch and Bound Algorithm for the Protein Folding Problem in the HP Lattice Model

Genomics Proteomics & Bioinformatics ◽

10.1016/s1672-0229(05)03031-7 ◽

2005 ◽

Vol 3 (4) ◽

pp. 225-230 ◽

Author(s):

Mao Chen ◽

Wen-Qi Huang

Keyword(s):

Protein Folding ◽

Branch And Bound ◽

Lattice Model ◽

Branch And Bound Algorithm ◽

Hp Lattice Model

Download Full-text

Protein folding prediction in 3D FCC HP lattice model using genetic algorithm

2007 IEEE Congress on Evolutionary Computation ◽

10.1109/cec.2007.4425011 ◽

2007 ◽

Author(s):

Md Tamjidul Hoque ◽

Madhu Chetty ◽

Abdul Sattar

Keyword(s):

Genetic Algorithm ◽

Protein Folding ◽

Lattice Model ◽

Hp Lattice Model

Download Full-text

A Hybrid Genetic Algorithm for the Protein Folding Problem Using the 2D-HP Lattice Model

Studies in Computational Intelligence - Success in Evolutionary Computation ◽

10.1007/978-3-540-76286-7_6 ◽

2008 ◽

pp. 121-140 ◽

Author(s):

Heitor S. Lopes ◽

Marcos P. Scapin

Keyword(s):

Genetic Algorithm ◽

Protein Folding ◽

Lattice Model ◽

Hybrid Genetic Algorithm ◽

Hp Lattice Model

Download Full-text

Heuristic energy landscape paving for protein folding problem in the three-dimensional HP lattice model

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2012.02.001 ◽

2012 ◽

Vol 38 ◽

pp. 17-26 ◽

Author(s):

Jingfa Liu ◽

Gang Li ◽

Jun Yu ◽

Yonglei Yao

Keyword(s):

Protein Folding ◽

Lattice Model ◽

Energy Landscape ◽

Three Dimensional ◽

Energy Landscape Paving ◽

Hp Lattice Model

Download Full-text

Parallel Ant Colony Optimization for 3D Protein Structure Prediction using the HP Lattice Model

19th IEEE International Parallel and Distributed Processing Symposium ◽

10.1109/ipdps.2005.326 ◽

2005 ◽

Author(s):

D. Chu ◽

M. Till ◽

A. Zomaya

Keyword(s):

Protein Structure ◽

Ant Colony Optimization ◽

Protein Structure Prediction ◽

Lattice Model ◽

Structure Prediction ◽

3D Protein Structure ◽

Hp Lattice Model

Download Full-text

Energy landscape and dynamics of an HP lattice model of proteins —The role of anisotropy

EPL (Europhysics Letters) ◽

10.1209/0295-5075/104/58001 ◽

2013 ◽

Vol 104 (5) ◽

pp. 58001 ◽

Author(s):

Marek Cieplak ◽

Jayanth R. Banavar

Keyword(s):

Lattice Model ◽

Energy Landscape ◽

Hp Lattice Model

Download Full-text

Parallel Ant Colony Optimization for 3D Protein Structure Prediction using the HP Lattice Model

Studies in Computational Intelligence - Parallel Evolutionary Computations ◽

10.1007/3-540-32839-4_9 ◽

2006 ◽

pp. 177-198 ◽

Author(s):

Daniel Chu ◽

Albert Zomaya

Keyword(s):

Protein Structure ◽

Ant Colony Optimization ◽

Protein Structure Prediction ◽

Lattice Model ◽

Structure Prediction ◽

3D Protein Structure ◽

Hp Lattice Model

Download Full-text

Protein Structure Prediction in 2D HP Lattice Model Using Differential Evolutionary Algorithm

Advances in Intelligent and Soft Computing - Proceedings of the International Conference on Information Systems Design and Intelligent Applications 2012 (INDIA 2012) held in Visakhapatnam, India, January 2012 ◽

10.1007/978-3-642-27443-5_32 ◽

2012 ◽

pp. 281-290 ◽

Author(s):

Nanda Dulal Jana ◽

Jaya Sil

Keyword(s):

Protein Structure ◽

Evolutionary Algorithm ◽

Protein Structure Prediction ◽

Lattice Model ◽

Structure Prediction ◽

Differential Evolutionary Algorithm ◽

Hp Lattice Model

Download Full-text

A Novel Branch-and-Bound Algorithm for the Protein Folding Problem in the 3D HP Model

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2019.2934102 ◽

2020 ◽

pp. 1-1

Author(s):

Hsin-Hung Chou ◽

Ching-Tien Hsu ◽

Li-Hsuan Chen ◽

Yue-Cheng Lin ◽

Sun-Yuan Hsieh

Keyword(s):

Protein Folding ◽

Branch And Bound ◽

Branch And Bound Algorithm ◽

Download Full-text

PREDICTION OF RESIDUE EXPOSURE AND CONTACT NUMBER FOR SIMPLIFIED HP LATTICE MODEL PROTEINS USING LEARNING CLASSIFIER SYSTEMS

Applied Artificial Intelligence ◽

10.1142/9789812774118_0085 ◽

2006 ◽

Author(s):

MICHAEL STOUT ◽

JAUME BACARDIT ◽

JONATHAN D. HIRST ◽

JACEK BLAZEWICZ ◽

NATALIO KRASNOGOR

Keyword(s):

Lattice Model ◽

Learning Classifier Systems ◽

Classifier Systems ◽

Contact Number ◽

Learning Classifier ◽

Hp Lattice Model

Download Full-text

Enhanced hybrid search algorithm for protein structure prediction using the 3D-HP lattice model

Journal of Molecular Modeling ◽

10.1007/s00894-013-1907-8 ◽

2013 ◽

Vol 19 (9) ◽

pp. 3883-3891 ◽

Author(s):

Changjun Zhou ◽

Caixia Hou ◽

Qiang Zhang ◽

Xiaopeng Wei

Keyword(s):

Protein Structure ◽

Protein Structure Prediction ◽

Lattice Model ◽

Structure Prediction ◽

Search Algorithm ◽

Hybrid Search ◽

Hp Lattice Model

Download Full-text