scholarly journals Conformational Sampling of Oligosaccharides Using Hamiltonian Replica Exchange with Two-Dimensional Dihedral Biasing Potentials and the Weighted Histogram Analysis Method (WHAM)

2015 ◽  
Vol 11 (2) ◽  
pp. 788-799 ◽  
Author(s):  
Mingjun Yang ◽  
Alexander D. MacKerell
Keyword(s):  
Histogram Analysis ◽  
Replica Exchange ◽  
Conformational Sampling ◽  
Two Dimensional ◽  
Analysis Method ◽  
Hamiltonian Replica Exchange ◽  
Weighted Histogram ◽  
Weighted Histogram Analysis

Temperature Weighted Histogram Analysis Method, Replica Exchange, and Transition Paths†

2005 ◽  
Vol 109 (14) ◽  
pp. 6722-6731 ◽  
Author(s):  
Emilio Gallicchio ◽  
Michael Andrec ◽  
Anthony K. Felts ◽  
Ronald M. Levy
Keyword(s):  
Histogram Analysis ◽  
Replica Exchange ◽  
Analysis Method ◽  
Transition Paths ◽  
Weighted Histogram ◽  
Weighted Histogram Analysis

THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

1992 ◽  
Vol 13 (8) ◽  
pp. 1011-1021 ◽  
Author(s):  
Shankar Kumar ◽  
John M. Rosenberg ◽  
Djamal Bouzida ◽  
Robert H. Swendsen ◽  
Peter A. Kollman
Keyword(s):  
Free Energy ◽  
Free Energy Calculations ◽  
Histogram Analysis ◽  
Analysis Method ◽  
Energy Calculations ◽  
Weighted Histogram ◽  
Weighted Histogram Analysis

The multicanonical weighted histogram analysis method for the free-energy landscape along structural transition paths

1999 ◽  
Vol 312 (2-4) ◽  
pp. 247-254 ◽  
Author(s):  
Satoshi Ono ◽  
Nobuyuki Nakajima ◽  
Junichi Higo ◽  
Haruki Nakamura
Keyword(s):  
Free Energy ◽  
Structural Transition ◽  
Energy Landscape ◽  
Histogram Analysis ◽  
Free Energy Landscape ◽  
Analysis Method ◽  
Transition Paths ◽  
Weighted Histogram ◽  
Weighted Histogram Analysis

scholarly journals Accelerating the weighted histogram analysis method by direct inversion in the iterative subspace

2016 ◽  
Vol 42 (13) ◽  
pp. 1079-1089 ◽  
Author(s):  
Cheng Zhang ◽  
Chun-Liang Lai ◽  
B. Montgomery Pettitt
Keyword(s):  
Histogram Analysis ◽  
Analysis Method ◽  
Direct Inversion ◽  
Weighted Histogram ◽  
Weighted Histogram Analysis

Weighted histogram analysis method for multiple short-time metadynamics simulations

2020 ◽  
Vol 751 ◽  
pp. 137384 ◽  
Author(s):  
Junichi Ono ◽  
Hiromi Nakai
Keyword(s):  
Histogram Analysis ◽  
Analysis Method ◽  
Short Time ◽  
Weighted Histogram ◽  
Weighted Histogram Analysis
Sign in / Sign up

Export Citation Format

Share Document