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Deep learning and protein structure modeling
Nature Methods
◽
10.1038/s41592-021-01360-8
◽
2022
◽
Vol 19
(1)
◽
pp. 13-14
Author(s):
Minkyung Baek
◽
David Baker
Keyword(s):
Deep Learning
◽
Protein Structure
◽
Structure Modeling
◽
Protein Structure Modeling
Download Full-text
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References
MAINMAST: de novo protein structure modeling for cryo-EM maps assisted by structure feature detection by deep learning
Acta Crystallographica Section A Foundations and Advances
◽
10.1107/s0108767321099025
◽
2021
◽
Vol 77
(a1)
◽
pp. a97-a97
Author(s):
Genki Terashi
◽
Xiao Wang
◽
Daisuke Kihara
Keyword(s):
Deep Learning
◽
Protein Structure
◽
Feature Detection
◽
De Novo
◽
Structure Modeling
◽
Structure Feature
◽
Protein Structure Modeling
Download Full-text
In silico Protein Structure Modeling and Conservation Analysis of ChrR, a Class-I Chromate Reducing Flavoenzyme from Pseudomonas putida
Protein and Peptide Letters
◽
10.2174/0929866511320090011
◽
2013
◽
Vol 20
(9)
◽
pp. 1049-1053
◽
Cited By ~ 2
Author(s):
Shivani Viradia
◽
Anjana Vala
Keyword(s):
Protein Structure
◽
Pseudomonas Putida
◽
In Silico
◽
Class I
◽
Structure Modeling
◽
Conservation Analysis
◽
Protein Structure Modeling
Download Full-text
ESCASA : Analytical estimation of atomic coordinates from coarse‐grained geometry for nuclear‐magnetic‐resonance ‐assisted protein structure modeling. I. Backbone and H β protons
Journal of Computational Chemistry
◽
10.1002/jcc.26695
◽
2021
◽
Author(s):
Emilia A. Lubecka
◽
Adam Liwo
Keyword(s):
Nuclear Magnetic Resonance
◽
Protein Structure
◽
Magnetic Resonance
◽
Coarse Grained
◽
Structure Modeling
◽
Protein Structure Modeling
◽
Analytical Estimation
◽
Atomic Coordinates
◽
Nuclear Magnetic
Download Full-text
Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments
Bioinformatics
◽
10.1093/bioinformatics/btm377
◽
2007
◽
Vol 23
(19)
◽
pp. 2558-2565
◽
Cited By ~ 66
Author(s):
N. Fernandez-Fuentes
◽
B. K. Rai
◽
C. J. Madrid-Aliste
◽
J. Eduardo Fajardo
◽
A. Fiser
Keyword(s):
Protein Structure
◽
Structure Modeling
◽
Protein Structure Modeling
◽
Multiple Templates
Download Full-text
RosettaBackrub--a web server for flexible backbone protein structure modeling and design
Nucleic Acids Research
◽
10.1093/nar/gkq369
◽
2010
◽
Vol 38
(Web Server)
◽
pp. W569-W575
◽
Cited By ~ 80
Author(s):
F. Lauck
◽
C. A. Smith
◽
G. F. Friedland
◽
E. L. Humphris
◽
T. Kortemme
Keyword(s):
Protein Structure
◽
Web Server
◽
Structure Modeling
◽
Protein Structure Modeling
Download Full-text
Evaluation of comparative protein structure modeling by MODELLER-3
Proteins Structure Function and Bioinformatics
◽
10.1002/(sici)1097-0134(1997)1+<50::aid-prot8>3.0.co;2-s
◽
1997
◽
Vol 29
(S1)
◽
pp. 50-58
◽
Cited By ~ 153
Author(s):
Roberto Sánchez
◽
Andrej Šali
Keyword(s):
Protein Structure
◽
Structure Modeling
◽
Protein Structure Modeling
Download Full-text
AS2TS system for protein structure modeling and analysis
Nucleic Acids Research
◽
10.1093/nar/gki457
◽
2005
◽
Vol 33
(Web Server)
◽
pp. W111-W115
◽
Cited By ~ 31
Author(s):
A. Zemla
◽
C. E. Zhou
◽
T. Slezak
◽
T. Kuczmarski
◽
D. Rama
◽
...
Keyword(s):
Protein Structure
◽
Structure Modeling
◽
Modeling And Analysis
◽
Protein Structure Modeling
Download Full-text
Protein Structure Modeling
NATO Science for Peace and Security Series A: Chemistry and Biology - From Molecules to Medicines
◽
10.1007/978-90-481-2339-1_9
◽
2009
◽
pp. 139-151
◽
Cited By ~ 2
Author(s):
Narayanan Eswar
◽
Andrej Sali
Keyword(s):
Protein Structure
◽
Structure Modeling
◽
Protein Structure Modeling
Download Full-text
Protein Structure Modeling with MODELLER
Methods in Molecular Biology - Structural Proteomics
◽
10.1007/978-1-60327-058-8_8
◽
2008
◽
pp. 145-159
◽
Cited By ~ 619
Author(s):
Narayanan Eswar
◽
David Eramian
◽
Ben Webb
◽
Min-Yi Shen
◽
Andrej Sali
Keyword(s):
Protein Structure
◽
Structure Modeling
◽
Protein Structure Modeling
Download Full-text
Protein Structure Modeling
Encyclopedia of Biophysics
◽
10.1007/978-3-642-16712-6_100820
◽
2013
◽
pp. 2060-2060
Keyword(s):
Protein Structure
◽
Structure Modeling
◽
Protein Structure Modeling
Download Full-text
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