Optimal control for probabilistic Boolean networks

2010 ◽  
Vol 4 (2) ◽  
pp. 99-107 ◽  
Author(s):  
Q. Liu ◽  
X. Guo ◽  
T. Zhou
2009 ◽  
Vol 3 (2) ◽  
pp. 90-99 ◽  
Author(s):  
W.-K. Ching ◽  
A.S. Wong ◽  
T. Akutsu ◽  
N.-K. Tsing ◽  
S.-Q. Zhang ◽  
...  

Complexity ◽  
2018 ◽  
Vol 2018 ◽  
pp. 1-12 ◽  
Author(s):  
Qiuli Liu ◽  
Qingguo Zeng ◽  
Jinghao Huang ◽  
Deliang Li

Synchronous probabilistic Boolean networks (PBNs) and generalized asynchronous PBNs have received significant attention over the past decade as a tool for modeling complex genetic regulatory networks. From a biological perspective, the occurrence of interactions among genes, such as transcription, translation, and degradation, may require a few milliseconds or even up to a few seconds. Such a time delay can be best characterized by generalized asynchronous PBNs. This paper attempts to study an optimal control problem in a generalized asynchronous PBN by employing the theory of average value-at-risk (AVaR) for finite horizon semi-Markov decision processes. Specifically, we first formulate a control model for a generalized asynchronous PBN as an AVaR model for finite horizon semi-Markov decision processes and then solve an optimal control problem for minimizing average value-at-risk criterion over a finite horizon. In order to illustrate the validity of our approach, a numerical example is also displayed.


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