scholarly journals D-Trace estimation of a precision matrix with eigenvalue control

Author(s):  
Vahe Avagyan
2016 ◽  
Vol 12 (2) ◽  
pp. 425-447 ◽  
Author(s):  
Vahe Avagyan ◽  
Andrés M. Alonso ◽  
Francisco J. Nogales

2009 ◽  
Vol 29 (4) ◽  
pp. 1177-1179 ◽  
Author(s):  
Chang SU ◽  
Zhong-liang FU ◽  
Yu-chen TAN

CALCOLO ◽  
2021 ◽  
Vol 58 (1) ◽  
Author(s):  
A. H. Bentbib ◽  
M. El Ghomari ◽  
K. Jbilou ◽  
L. Reichel

Author(s):  
Alice Cortinovis ◽  
Daniel Kressner

AbstractRandomized trace estimation is a popular and well-studied technique that approximates the trace of a large-scale matrix B by computing the average of $$x^T Bx$$ x T B x for many samples of a random vector X. Often, B is symmetric positive definite (SPD) but a number of applications give rise to indefinite B. Most notably, this is the case for log-determinant estimation, a task that features prominently in statistical learning, for instance in maximum likelihood estimation for Gaussian process regression. The analysis of randomized trace estimates, including tail bounds, has mostly focused on the SPD case. In this work, we derive new tail bounds for randomized trace estimates applied to indefinite B with Rademacher or Gaussian random vectors. These bounds significantly improve existing results for indefinite B, reducing the number of required samples by a factor n or even more, where n is the size of B. Even for an SPD matrix, our work improves an existing result by Roosta-Khorasani and Ascher (Found Comput Math, 15(5):1187–1212, 2015) for Rademacher vectors. This work also analyzes the combination of randomized trace estimates with the Lanczos method for approximating the trace of f(B). Particular attention is paid to the matrix logarithm, which is needed for log-determinant estimation. We improve and extend an existing result, to not only cover Rademacher but also Gaussian random vectors.


2018 ◽  
Vol 2018 ◽  
pp. 1-13
Author(s):  
JungJun Lee ◽  
SungHwan Kim ◽  
Jae-Hwan Jhong ◽  
Ja-Yong Koo

In genomic data analysis, it is commonplace that underlying regulatory relationship over multiple genes is hardly ascertained due to unknown genetic complexity and epigenetic regulations. In this paper, we consider a joint mean and constant covariance model (JMCCM) that elucidates conditional dependent structures of genes with controlling for potential genotype perturbations. To this end, the modified Cholesky decomposition is utilized to parametrize entries of a precision matrix. The JMCCM maximizes the likelihood function to estimate parameters involved in the model. We also develop a variable selection algorithm that selects explanatory variables and Cholesky factors by exploiting the combination of the GCV and BIC as benchmarks, together with Rao and Wald statistics. Importantly, we notice that sparse estimation of a precision matrix (or equivalently gene network) is effectively achieved via the proposed variable selection scheme and contributes to exploring significant hub genes shown to be concordant to a priori biological evidence. In simulation studies, we confirm that our model selection efficiently identifies the true underlying networks. With an application to miRNA and SNPs data from yeast (a.k.a. eQTL data), we demonstrate that constructed gene networks reproduce validated biological and clinical knowledge with regard to various pathways including the cell cycle pathway.


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