Cache-Oblivious Dynamic Programming for Bioinformatics

2010 ◽  
Vol 7 (3) ◽  
pp. 495-510 ◽  
Author(s):  
Rezaul Alan Chowdhury ◽  
Hai-Son Le ◽  
Vijaya Ramachandran
2005 ◽  
Vol DMTCS Proceedings vol. AD,... (Proceedings) ◽  
Author(s):  
Cary Cherng ◽  
Richard E. Ladner

International audience New cache-oblivious and cache-aware algorithms for simple dynamic programming based on Valiant's context-free language recognition algorithm are designed, implemented, analyzed, and empirically evaluated with timing studies and cache simulations. The studies show that for large inputs the cache-oblivious and cache-aware dynamic programming algorithms are significantly faster than the standard dynamic programming algorithm.


2015 ◽  
Vol 50 (8) ◽  
pp. 205-214 ◽  
Author(s):  
Yuan Tang ◽  
Ronghui You ◽  
Haibin Kan ◽  
Jesmin Jahan Tithi ◽  
Pramod Ganapathi ◽  
...  

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