A grid search procedure of positioning a known molecule in an unknown crystal structure with the use of powder diffraction data

1998 ◽  
Vol 213 (1) ◽  
pp. 1-3 ◽  
Author(s):  
V. V. Chernyshev ◽  
H. Schenk

AbstractAn efficient grid search procedure successfully applied to the solution of three unknown molecular structures from X-ray and neutron powder diffraction data is presented.

1999 ◽  
Vol 55 (4) ◽  
pp. 554-562 ◽  
Author(s):  
V. V. Chernyshev ◽  
A. N. Fitch ◽  
E. J. Sonneveld ◽  
A. I. Kurbakov ◽  
V. A. Makarov ◽  
...  

The crystal and molecular structures of 2-[1-(2-aminoethyl)-2-imidazolidinylidene]-2-nitroacetonitrile [C7H11N5O2; space group P21/n; Z = 4; a = 7.4889 (8), b = 17.273 (2), c = 7.4073 (8) Å, β = 111.937 (6)°], (I), and 2,6-diamino-5-hydroxy-3-nitro-4H-pyrazolo[1,5-a]pyrimidin-7-one monohydrate [C6H6N6O4·H2O; space group P21/n; Z = 4; a = 17.576 (3), b = 10.900 (2), c = 4.6738 (6) Å, β = 92.867 (8)°], (II), have been determined from X-ray, synchrotron and neutron powder diffraction data using various methods. The structures were originally solved from Guinier photographs with a grid search procedure and the program MRIA using a priori information from NMR and mass spectra on the possible geometry of the molecules. Because the conformation of molecule (I) changed during the bond-restrained Rietveld refinement, solvent water was found in (II) and, moreover, as both Guinier patterns were corrupted by texture, high-resolution texture-free synchrotron data were collected at the BM16 beamline, ESRF, to confirm the original results. Using the set of |F| 2 values derived from the synchrotron patterns after full-pattern decomposition procedures, the structures of (I) and (II) were solved by direct methods via SHELXS96, SIRPOW.92 and POWSIM without any preliminary models of the molecules, and by Patterson search methods via DIRDIF96 and PATSEE with the use of rigid fragments from each of the molecules. The neutron patterns allowed (I) and (II) to be solved using the grid search procedure and correct initial models of the molecules including H atoms. The results obtained from powder patterns measured on different devices demonstrate the high level of reproducibility and reliability of various powder software and equipment, with a certain preference for synchrotron facilities.


2005 ◽  
Vol 20 (3) ◽  
pp. 189-192 ◽  
Author(s):  
Alexander P. Tyutyunnik ◽  
Vladimir G. Zubkov ◽  
Ludmila L. Surat ◽  
Boris V. Slobodin ◽  
Gunnar Svensson

The compound Na2ZnV2O7 with an åkermanite-type structure has been synthesized. It has a tetragonal unit cell, a=8.2711(4), c=5.1132(2) Å, and crystallizes with P-421m symmetry, Z=2. Its crystal structure has been refined from a combination of X-ray and neutron powder diffraction data. The structure contains layers of corner-sharing VO4 and ZnO4 tetrahedra, the former in pairs forming pyrovanadate V2O7 units. The sodium atoms are positioned between the layers, with a distorted antiprismatic coordination of oxygen atoms.


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