PNmerger: a Cytoscape Plugin to Merge Biological Pathways and Protein Interaction Networks*

Han-Chang SUN; Dong LI; Jian WANG; Zhong-Yang LIU; Yun-Ping ZHU; Hong-Wei XIE; Fu-Chu HE

doi:10.3724/sp.j.1206.2009.00236

PNmerger: a Cytoscape Plugin to Merge Biological Pathways and Protein Interaction Networks*

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS ◽

10.3724/sp.j.1206.2009.00236 ◽

2010 ◽

Vol 2009 (12) ◽

pp. 1613-1616

Author(s):

Han-Chang SUN ◽

Dong LI ◽

Jian WANG ◽

Zhong-Yang LIU ◽

Yun-Ping ZHU ◽

...

Keyword(s):

Protein Interaction ◽

Biological Pathways ◽

Protein Interaction Networks ◽

Interaction Networks

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Proteomic dissection of biological pathways/processes through profiling protein-protein interaction networks

Science China Chemistry ◽

10.1007/s11426-010-0136-6 ◽

2010 ◽

Vol 53 (4) ◽

pp. 737-746 ◽

Cited By ~ 1

Author(s):

Xian Chen

Keyword(s):

Protein Interaction ◽

Biological Pathways ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Functional Features, Biological Pathways, and Protein Interaction Networks of Addiction-Related Genes

Chemistry & Biodiversity ◽

10.1002/cbdv.200900319 ◽

2010 ◽

Vol 7 (5) ◽

pp. 1153-1162 ◽

Cited By ~ 14

Author(s):

Jingchun Sun ◽

Zhongming Zhao

Keyword(s):

Protein Interaction ◽

Biological Pathways ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Features

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Protein Interaction Networks: When the Sum Is Greater than the Parts

PSI Structural Genomics Knowledgebase ◽

10.1038/sbkb.2012.133 ◽

2013 ◽

Author(s):

Angela K. Eggleston

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks

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Faculty Opinions recommendation of Unraveling protein interaction networks with near-optimal efficiency.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1003185.201077 ◽

2003 ◽

Author(s):

Sachdev Sidhu

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Optimal Efficiency

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Faculty Opinions recommendation of A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1003682.38006 ◽

2002 ◽

Author(s):

Michael Glotzer

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Peptide Recognition ◽

Computational Strategy

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Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Modular Decomposition ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.720591107.793501202 ◽

2015 ◽

Author(s):

Gary Bader ◽

Mohamed Helmy

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Linear Motif ◽

Complex Protein

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Faculty Opinions recommendation of Protein interaction networks revealed by proteome coevolution.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.736183548.793563497 ◽

2019 ◽

Author(s):

Xiayang Qiu ◽

Litao Sun

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks

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Protein Interaction Networks in Metallo Proteins and Docking Approaches of Metallic Compounds with TIMP and MMP in Control of MAPK Pathway

Letters in Drug Design & Discovery ◽

10.2174/157018013804142465 ◽

2013 ◽

Vol 10 (1) ◽

pp. 49-55 ◽

Cited By ~ 2

Author(s):

Kaladhar Svgk Dowluru ◽

Potladurthi Chandra Sai ◽

Padmanabhuni Venkata Nageswara Rao ◽

Amajala Krishna chaitanya ◽

Duddukuri Govinda Rao ◽

...

Keyword(s):

Protein Interaction ◽

Mapk Pathway ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Metallic Compounds

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