Context-specific amino acid substitution matrices and their use in the detection of protein homologs

2007 ◽  
Vol 71 (2) ◽  
pp. 910-919 ◽  
Author(s):  
Nalin C. W. Goonesekere ◽  
Byungkook Lee
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Specific Amino Acid ◽  
Substitution Matrices ◽  
Specific Amino Acid Substitution ◽  
Context Specific ◽  
Amino Acid Substitution Matrices

scholarly journals Discriminative modelling of context-specific amino acid substitution probabilities

2012 ◽  
Vol 28 (24) ◽  
pp. 3240-3247 ◽  
Author(s):  
Christof Angermüller ◽  
Andreas Biegert ◽  
Johannes Söding
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Specific Amino Acid ◽  
Specific Amino Acid Substitution ◽  
Context Specific

scholarly journals Environment-specific amino acid substitution tables: Tertiary templates and prediction of protein folds

1992 ◽  
Vol 1 (2) ◽  
pp. 216-226 ◽  
Author(s):  
John Overington ◽  
Dan Donnelly ◽  
Mark S. Johnson ◽  
Andrej Šali ◽  
Tom L. Blundell
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Specific Amino Acid ◽  
Protein Folds ◽  
Specific Amino Acid Substitution

Comparison of the PAM and BLOSUM Amino Acid Substitution Matrices

2008 ◽  
Vol 2008 (6) ◽  
pp. pdb.ip59-pdb.ip59 ◽  
Author(s):  
D. W. Mount
Keyword(s):  
Amino Acid ◽  
Amino Acid Substitution ◽  
Substitution Matrices ◽  
Amino Acid Substitution Matrices

Performance evaluation of amino acid substitution matrices

1993 ◽  
Vol 17 (1) ◽  
pp. 49-61 ◽  
Author(s):  
Steven Henikoff ◽  
Jorja G. Henikoff
Keyword(s):  
Performance Evaluation ◽  
Amino Acid ◽  
Amino Acid Substitution ◽  
Substitution Matrices ◽  
Amino Acid Substitution Matrices
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