Comparative Study of Computational Strategies for Protein Structure Prediction

Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications - Studies in Computational Intelligence ◽

10.1007/978-3-319-71008-2_32 ◽

2018 ◽

pp. 449-459 ◽

Cited By ~ 1

Author(s):

Fanny G. Maldonado-Nava ◽

Juan Frausto-Solís ◽

Juan Paulo Sánchez-Hernández ◽

Juan Javier González Barbosa ◽

Ernesto Liñán-García

Keyword(s):

Protein Structure ◽

Comparative Study ◽

Protein Structure Prediction ◽

Structure Prediction

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A Comparative Study of Various Meta-Heuristic Algorithms for Ab Initio Protein Structure Prediction on 2D Hydrophobic-Polar Model

Advances in Intelligent Systems and Computing - Proceedings of Fifth International Conference on Soft Computing for Problem Solving ◽

10.1007/978-981-10-0451-3_36 ◽

2016 ◽

pp. 387-399 ◽

Cited By ~ 2

Author(s):

Sandhya P N Dubey ◽

S. Balaji ◽

N. Gopalakrishna Kini ◽

M. Sathish Kumar

Keyword(s):

Protein Structure ◽

Comparative Study ◽

Ab Initio ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Heuristic Algorithms ◽

Polar Model

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A Comparative Study of Parallel Metaheuristics for Protein Structure Prediction on the Computational Grid

2007 IEEE International Parallel and Distributed Processing Symposium ◽

10.1109/ipdps.2007.370439 ◽

2007 ◽

Cited By ~ 4

Author(s):

Alexandru-Adrian Tantar ◽

Nouredine Melab ◽

El-Ghazali Talbi

Keyword(s):

Protein Structure ◽

Comparative Study ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Computational Grid ◽

Parallel Metaheuristics

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Sequence Specific Dihedral Angle Distribution: Application in Protein Structure Prediction and Evaluation

Plant Tissue Culture and Biotechnology ◽

10.3329/ptcb.v19i2.5439 ◽

1970 ◽

Vol 19 (2) ◽

pp. 217-226

Author(s):

S. M. Minhaz Ud-Dean ◽

Mahdi Muhammad Moosa

Keyword(s):

Protein Structure ◽

Dihedral Angle ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Protein Structures ◽

Angle Distribution ◽

Ramachandran Plot ◽

Specific Data ◽

Specific Distribution ◽

Structure Evaluation

Protein structure prediction and evaluation is one of the major fields of computational biology. Estimation of dihedral angle can provide information about the acceptability of both theoretically predicted and experimentally determined structures. Here we report on the sequence specific dihedral angle distribution of high resolution protein structures available in PDB and have developed Sasichandran, a tool for sequence specific dihedral angle prediction and structure evaluation. This tool will allow evaluation of a protein structure in pdb format from the sequence specific distribution of Ramachandran angles. Additionally, it will allow retrieval of the most probable Ramachandran angles for a given sequence along with the sequence specific data. Key words: Torsion angle, φ-ψ distribution, sequence specific ramachandran plot, Ramasekharan, protein structure appraisal D.O.I. 10.3329/ptcb.v19i2.5439 Plant Tissue Cult. & Biotech. 19(2): 217-226, 2009 (December)

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