An Empirical Backbone−Backbone Hydrogen-Bonding Potential in Proteins and Its Applications to NMR Structure Refinement and Validation

Alexander Grishaev; Ad Bax

doi:10.1021/ja0319994

An Empirical Backbone−Backbone Hydrogen-Bonding Potential in Proteins and Its Applications to NMR Structure Refinement and Validation

Journal of the American Chemical Society ◽

10.1021/ja0319994 ◽

2004 ◽

Vol 126 (23) ◽

pp. 7281-7292 ◽

Cited By ~ 85

Author(s):

Alexander Grishaev ◽

Ad Bax

Keyword(s):

Hydrogen Bonding ◽

Structure Refinement ◽

Nmr Structure ◽

Hydrogen Bonding Potential

Double zipper helical assembly of deoxyoligonucleotides: mutual templating and chiral imprinting to form hybrid DNA ensembles

Chemical Communications ◽

10.1039/c4cc06759b ◽

2015 ◽

Vol 51 (25) ◽

pp. 5493-5496 ◽

Cited By ~ 12

Author(s):

Nagarjun Narayanaswamy ◽

Gorle Suresh ◽

U. Deva Priyakumar ◽

T. Govindaraju

Keyword(s):

Hydrogen Bonding ◽

Ambient Conditions ◽

Hydrogen Bonding Potential ◽

Hybrid Dna

Herein, the conventional and unconventional hydrogen bonding potential of adenine in APA for double zipper helical assembly of deoxyoligonucleotides is demonstrated under ambient conditions.

Short Communication: Hydrogen bonding and crystal structure refinement of bromanilic acid

Zeitschrift für Kristallographie - Crystalline Materials ◽

10.1524/zkri.1987.180.14.249 ◽

1987 ◽

Vol 180 (1-4) ◽

Author(s):

Christian Robl

Keyword(s):

Crystal Structure ◽

Hydrogen Bonding ◽

Short Communication ◽

Structure Refinement ◽

Crystal Structure Refinement

NMR restraint analysis of transforming growth factor α: A key component for NMR structure refinement

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340130404 ◽

1992 ◽

Vol 13 (4) ◽

pp. 306-326 ◽

Cited By ~ 2

Author(s):

Frank K. Brown ◽

Judith C. Hempel ◽

Peter W. Jeffs

Keyword(s):

Growth Factor ◽

Transforming Growth Factor ◽

Structure Refinement ◽

Nmr Structure ◽

Transforming Growth Factor Α ◽

Factor Α

The VMD-XPLOR Visualization Package for NMR Structure Refinement

Journal of Magnetic Resonance ◽

10.1006/jmre.2001.2300 ◽

2001 ◽

Vol 149 (2) ◽

pp. 239-244 ◽

Cited By ~ 79

Author(s):

Charles D. Schwieters ◽

G.Marius Clore

Keyword(s):

Structure Refinement ◽

Nmr Structure

Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymic activity, not, however, the preference of this restriction endonuclease for cleavage within the site -GAATTC-

Biochemistry ◽

10.1021/bi00432a047 ◽

1989 ◽

Vol 28 (6) ◽

pp. 2678-2684 ◽

Cited By ~ 57

Author(s):

Jurgen Alves ◽

Thomas Rueter ◽

Robert Geiger ◽

Anja Fliess ◽

Guenter Maass ◽

...

Keyword(s):

Hydrogen Bonding ◽

Dna Binding ◽

Binding Site ◽

Restriction Endonuclease ◽

Enzymic Activity ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Dna Binding Site ◽

Hydrogen Bonding Potential

Automated NMR structure refinement via NOE peak volumes. Application to a dodecamer DNA duplex

Journal of Magnetic Resonance (1969) ◽

10.1016/0022-2364(92)90271-8 ◽

1992 ◽

Vol 100 (2) ◽

pp. 382-390

Author(s):

Seong-Gi Kim ◽

Brian R Reid

Keyword(s):

Structure Refinement ◽

Nmr Structure ◽

Dna Duplex

Hydrogen bonding and crystal structure refinement of bromanilic acid

Zeitschrift für Kristallographie ◽

10.1524/zkri.1987.180.1-4.249 ◽

1987 ◽

Vol 180 (1-4) ◽

pp. 249-253 ◽

Cited By ~ 8

Author(s):

Christian Robl

Keyword(s):

Crystal Structure ◽

Hydrogen Bonding ◽

Structure Refinement ◽

Crystal Structure Refinement

A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

Nucleic Acids Research ◽

10.1093/nar/gkh785 ◽

2004 ◽

Vol 32 (17) ◽

pp. 5147-5162 ◽

Cited By ~ 58

Author(s):

Y. Chen

Keyword(s):

Hydrogen Bonding ◽

Hydrogen Bonding Potential

Satisfying Hydrogen Bonding Potential in Proteins

Journal of Molecular Biology ◽

10.1006/jmbi.1994.1334 ◽

1994 ◽

Vol 238 (5) ◽

pp. 777-793 ◽

Cited By ~ 1472

Author(s):

Ian K. McDonald ◽

Janet M. Thornton

Keyword(s):

Hydrogen Bonding ◽

Hydrogen Bonding Potential

The synthesis of antiviral compounds with ambivalent hydrogen bonding potential

Collection of Czechoslovak Chemical Communications ◽

10.1135/cccc1993s029 ◽

1993 ◽

Vol 58 (s1) ◽

pp. 29-32

Author(s):

D. Loakes ◽

Daniel M. Brown

Keyword(s):

Hydrogen Bonding ◽

Antiviral Compounds ◽

Hydrogen Bonding Potential