scholarly journals A method for optimizing potential-energy functions by a hierarchical design of the potential-energy landscape: Application to the UNRES force field

2002 ◽  
Vol 99 (4) ◽  
pp. 1937-1942 ◽  
Author(s):  
A. Liwo ◽  
P. Arlukowicz ◽  
C. Czaplewski ◽  
S. Oldziej ◽  
J. Pillardy ◽  
...  
Keyword(s):  
Potential Energy ◽  
Force Field ◽  
Energy Landscape ◽  
Hierarchical Design ◽  
Energy Functions ◽  
Potential Energy Functions ◽  
Potential Energy Landscape

Optimization of the UNRES Force Field by Hierarchical Design of the Potential-Energy Landscape. 2. Off-Lattice Tests of the Method with Single Proteins

2004 ◽  
Vol 108 (43) ◽  
pp. 16934-16949 ◽  
Author(s):  
Stanisław Ołdziej ◽  
Adam Liwo ◽  
Cezary Czaplewski ◽  
Jarosław Pillardy ◽  
Harold A. Scheraga
Keyword(s):  
Potential Energy ◽  
Force Field ◽  
Energy Landscape ◽  
Hierarchical Design ◽  
Potential Energy Landscape

Optimization of the UNRES Force Field by Hierarchical Design of the Potential-Energy Landscape. 3. Use of Many Proteins in Optimization

2004 ◽  
Vol 108 (43) ◽  
pp. 16950-16959 ◽  
Author(s):  
Stanisław Ołdziej ◽  
Justyna Ła̧giewka ◽  
Adam Liwo ◽  
Cezary Czaplewski ◽  
Maurizio Chinchio ◽  
...  
Keyword(s):  
Potential Energy ◽  
Force Field ◽  
Energy Landscape ◽  
Hierarchical Design ◽  
Potential Energy Landscape

scholarly journals The Consistent Force Field. 2. An Optimized Set of Potential Energy Functions for the Alkanes.

1994 ◽  
Vol 48 ◽  
pp. 553-565 ◽  
Author(s):  
Søren Balling Engelsen ◽  
Jesper Fabricius ◽  
Kjeld Rasmussen ◽  
P. Klæboe ◽  
C. J. Nielsen ◽  
...  
Keyword(s):  
Potential Energy ◽  
Force Field ◽  
Energy Functions ◽  
Potential Energy Functions ◽  
Consistent Force Field

scholarly journals The Consistent Force Field. 1. Methods and Strategies for Optimization of Empirical Potential Energy Functions.

1994 ◽  
Vol 48 ◽  
pp. 548-552 ◽  
Author(s):  
Søren Balling Engelsen ◽  
Jesper Fabricius ◽  
Kjeld Rasmussen ◽  
P. Klæboe ◽  
C. J. Nielsen ◽  
...  
Keyword(s):  
Potential Energy ◽  
Force Field ◽  
Energy Functions ◽  
Potential Energy Functions ◽  
Empirical Potential ◽  
Consistent Force Field
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