Differences in Hydration Coupled to Specific and Nonspecific Competitive Binding and to Specific DNA Binding of the Restriction Endonuclease BamHI

Competitive Binding ◽

Faculty Opinions recommendation of Design and synthesis of photochemically controllable restriction endonuclease BamHI by manipulating the salt-bridge network in the dimer interface.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020021.228471 ◽

2004 ◽

Author(s):

Barry Stoddard

Keyword(s):

Salt Bridge ◽

Dimer Interface ◽

Design And Synthesis ◽

Site-Directed Mutagenesis of Putative Active Site Residues ofMunI Restriction Endonuclease: Replacement of Catalytically Essential Carboxylate Residues Triggers DNA Binding Specificity†

Biochemistry ◽

10.1021/bi963125i ◽

1997 ◽

Vol 36 (37) ◽

pp. 11086-11092 ◽

Cited By ~ 23

Author(s):

Arunas Lagunavicius ◽

Virginijus Siksnys

Keyword(s):

Dna Binding ◽

Active Site ◽

Binding Specificity ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Active Site Residues ◽

Dna Binding Specificity ◽

Putative Active Site

Synthesis of the oligodeoxyribonucleotide, d(CpTpGpGpApTpCpCpApG), and its substrate activity with the restriction endonuclease, BamHI

Bioorganic Chemistry ◽

10.1016/0045-2068(85)90032-x ◽

1985 ◽

Vol 13 (4) ◽

pp. 323-334 ◽

Cited By ~ 5

Author(s):

Norbert Piel ◽

Fritz Benseler ◽

Erika Graeser ◽

Larry W. McLaughlin

Keyword(s):

Magnesium(2+) confers DNA binding specificity to the EcoRV restriction endonuclease

Biochemistry ◽

10.1021/bi00130a001 ◽

1992 ◽

Vol 31 (15) ◽

pp. 3727-3732 ◽

Cited By ~ 49

Author(s):

Vera Thielking ◽

Ursel Selent ◽

Eleonore Koehler ◽

Axel Landgraf ◽

Heiner Wolfes ◽

...

Keyword(s):

Dna Binding ◽

Binding Specificity ◽

Dna Binding Specificity

Crystallization of Restriction Endonuclease BamHI with Nonspecific DNA

Journal of Structural Biology ◽

10.1006/jsbi.2000.4235 ◽

2000 ◽

Vol 130 (1) ◽

pp. 81-85 ◽

Cited By ~ 9

Author(s):

Hector Viadiu ◽

Rebecca Kucera ◽

Ira Schildkraut ◽

Aneel K. Aggarwal

Keyword(s):

Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding

Structure ◽

10.1016/j.str.2008.01.017 ◽

2008 ◽

Vol 16 (4) ◽

pp. 558-569 ◽

Cited By ~ 25

Author(s):

Abigail R. Lambert ◽

Django Sussman ◽

Betty Shen ◽

Robert Maunus ◽

Jay Nix ◽

...

Keyword(s):

Dna Binding ◽

Metal Binding

Differences between Ca 2+ and Mg 2+ in DNA binding and release by the SfiI restriction endonuclease: implications for DNA looping

Nucleic Acids Research ◽

10.1093/nar/gkp569 ◽

2009 ◽

Vol 37 (16) ◽

pp. 5443-5453 ◽

Cited By ~ 14

Author(s):

Stuart R. W. Bellamy ◽

Yana S. Kovacheva ◽

Ishan Haji Zulkipli ◽

Stephen E. Halford

Keyword(s):

Dna Binding ◽

Dna Looping

Solution parameters modulating DNA binding specificity of the restriction endonuclease EcoRV

FEBS Journal ◽

10.1111/j.1742-4658.2011.08198.x ◽

2011 ◽

Vol 278 (15) ◽

pp. 2713-2727 ◽

Cited By ~ 11

Author(s):

Nina Y. Sidorova ◽

Shakir Muradymov ◽

Donald C. Rau

Keyword(s):

Dna Binding ◽

Binding Specificity ◽

Dna Binding Specificity ◽

Solution Parameters

Changing the hydrogen-bonding potential in the DNA binding site of EcoRI by site-directed mutagenesis drastically reduces the enzymic activity, not, however, the preference of this restriction endonuclease for cleavage within the site -GAATTC-

Biochemistry ◽

10.1021/bi00432a047 ◽

1989 ◽

Vol 28 (6) ◽

pp. 2678-2684 ◽

Cited By ~ 57

Author(s):

Jurgen Alves ◽

Thomas Rueter ◽

Robert Geiger ◽

Anja Fliess ◽

Guenter Maass ◽

...

Keyword(s):

Hydrogen Bonding ◽

Dna Binding ◽

Binding Site ◽

Enzymic Activity ◽

Site Directed Mutagenesis ◽

Directed Mutagenesis ◽

Dna Binding Site ◽

Hydrogen Bonding Potential

Characterization of DNA binding activities of over-expressedKpnI restriction endonuclease and modification methylase

Journal of Biosciences ◽

10.1007/bf02941240 ◽

1999 ◽

Vol 24 (3) ◽

pp. 269-277 ◽

Cited By ~ 10

Author(s):

Siddamadappa Chandrashekaran ◽

Padmanabhan Babu ◽

Valakunja Nagaraja

Keyword(s):

Dna Binding ◽

Restriction Endonuclease