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Impact of an enhanced thermodynamic model on RnaPredict, an evolutionary algorithm for RNA secondary structure prediction
2009 IEEE Congress on Evolutionary Computation
◽
10.1109/cec.2009.4983306
◽
2009
◽
Cited By ~ 2
Author(s):
Kay C. Wiese
◽
Andrew G. Hendriks
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Thermodynamic Model
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
Download Full-text
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References
Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data
PLoS ONE
◽
10.1371/journal.pone.0166965
◽
2016
◽
Vol 11
(11)
◽
pp. e0166965
◽
Cited By ~ 4
Author(s):
Soheila Montaseri
◽
Mohammad Ganjtabesh
◽
Fatemeh Zare-Mirakabad
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
◽
Shape Data
Download Full-text
Using stacking-energies (INN and INN-HB) for improving the accuracy of RNA secondary structure prediction with an evolutionary algorithm - a comparison to known structures
Proceedings of the 2004 Congress on Evolutionary Computation (IEEE Cat. No.04TH8753)
◽
10.1109/cec.2004.1330912
◽
2004
◽
Cited By ~ 13
Author(s):
A. Deschenes
◽
K.C. Wiese
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
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Multimodal Optimization Evolutionary Algorithm for RNA Secondary Structure Prediction
The Fifth International Conference on Biological Information and Biomedical Engineering
◽
10.1145/3469678.3469714
◽
2021
◽
Author(s):
Yunfei Hu
◽
Kai Zhang
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Multimodal Optimization
◽
Rna Secondary Structure Prediction
Download Full-text
A Detailed Analysis of Parallel Speedup in P-RnaPredict - An Evolutionary Algorithm for RNA Secondary Structure Prediction
2006 IEEE International Conference on Evolutionary Computation
◽
10.1109/cec.2006.1688595
◽
2006
◽
Author(s):
K.C. Wiese
◽
A. Hendriks
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Detailed Analysis
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
◽
Parallel Speedup
Download Full-text
A parallel evolutionary algorithm for RNA secondary structure prediction using stacking-energies (INN and INN-HB)
IGARSS 2004 2004 IEEE International Geoscience and Remote Sensing (IEEE Cat No 04CH37612) CIBCB-04
◽
10.1109/cibcb.2004.1393957
◽
2005
◽
Cited By ~ 4
Author(s):
A. Hendriks
◽
A. Deschenes
◽
K.C. Wiese
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
◽
Parallel Evolutionary Algorithm
Download Full-text
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
BMC Bioinformatics
◽
10.1186/1471-2105-12-429
◽
2011
◽
Vol 12
(1)
◽
pp. 429
◽
Cited By ~ 18
Author(s):
Stefan Janssen
◽
Christian Schudoma
◽
Gerhard Steger
◽
Robert Giegerich
Keyword(s):
Secondary Structure
◽
Thermodynamic Model
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
◽
Folding Space
Download Full-text
RnaPredict—An Evolutionary Algorithm for RNA Secondary Structure Prediction
IEEE/ACM Transactions on Computational Biology and Bioinformatics
◽
10.1109/tcbb.2007.1054
◽
2008
◽
Vol 5
(1)
◽
pp. 25-41
◽
Cited By ~ 39
Author(s):
K.C. Wiese
◽
A.A. Deschenes
◽
A.G. Hendriks
Keyword(s):
Secondary Structure
◽
Evolutionary Algorithm
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
Download Full-text
Faculty Opinions recommendation of COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account.
Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
◽
10.3410/f.718010599.793476797
◽
2013
◽
Author(s):
Scott Silverman
Keyword(s):
Secondary Structure
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Prediction Method
◽
Rna Secondary Structure Prediction
◽
Structure Prediction Method
◽
Secondary Structure Prediction Method
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A Discrete Hopfield Neural Network Based MIS Finding Algorithm for Stems Selecting and Its Application in RNA Secondary Structure Prediction
Chinese Journal of Computers
◽
10.3724/sp.j.1016.2008.00051
◽
2009
◽
Vol 31
(1)
◽
pp. 51-58
Author(s):
Qi LIU
◽
Yin ZHANG
◽
Xiu-Zi YE
◽
Rong-Dong YU
Keyword(s):
Neural Network
◽
Secondary Structure
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Secondary Structure Prediction
◽
Hopfield Neural Network
◽
Rna Secondary Structure Prediction
Download Full-text
A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more
RNA
◽
10.1261/rna.030049.111
◽
2011
◽
Vol 18
(2)
◽
pp. 193-212
◽
Cited By ~ 50
Author(s):
E. Rivas
◽
R. Lang
◽
S. R. Eddy
Keyword(s):
Secondary Structure
◽
Structure Prediction
◽
Rna Secondary Structure
◽
Probabilistic Models
◽
Nearest Neighbor
◽
Secondary Structure Prediction
◽
Rna Secondary Structure Prediction
Download Full-text
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