Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2012.50 ◽

2012 ◽

Vol 9 (4) ◽

pp. 1190-1202 ◽

Author(s):

Yijia Zhang ◽

Hongfei Lin ◽

Zhihao Yang ◽

Jian Wang ◽

Yanpeng Li

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

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Protein-protein interaction extraction based on actively transfer learning

2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2015.7359936 ◽

2015 ◽

Author(s):

Lishuang Li ◽

Jieqiong Zheng ◽

Dingxin Song ◽

Rui Guo ◽

Degen Huang

Keyword(s):

Transfer Learning ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

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WinBinVec: Cancer-Associated Protein-Protein Interaction Extraction and Identification of 20 Various Cancer Types and Metastasis Using Different Deep Learning Models

IEEE Journal of Biomedical and Health Informatics ◽

10.1109/jbhi.2021.3093441 ◽

2021 ◽

pp. 1-1

Author(s):

Sina Abdollahi ◽

Peng-Chan Lin ◽

Jung-Hsien Chiang

Keyword(s):

Deep Learning ◽

Protein Interaction ◽

Learning Models ◽

Protein Protein Interaction ◽

Interaction Extraction ◽

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Walk-weighted subsequence kernels for protein-protein interaction extraction

BMC Bioinformatics ◽

10.1186/1471-2105-11-107 ◽

2010 ◽

Vol 11 (1) ◽

Author(s):

Seonho Kim ◽

Juntae Yoon ◽

Jihoon Yang ◽

Seog Park

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

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PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2014.062890 ◽

2014 ◽

Vol 10 (1) ◽

pp. 98

Author(s):

Chuan Xi Li ◽

Peng Chen ◽

Ru Jing Wang ◽

Xiu Jie Wang ◽

Ya Ru Su ◽

...

Keyword(s):

Protein Interaction ◽

Two Stage ◽

Protein Protein Interaction ◽

Interaction Extraction ◽

Relation Ontology

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Mixture of logistic models and an ensemble approach for protein-protein interaction extraction

Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '11 ◽

10.1145/2147805.2147853 ◽

2011 ◽

Author(s):

Lindsey Bell ◽

Jinfeng Zhang ◽

Xufeng Niu

Keyword(s):

Protein Interaction ◽

Logistic Models ◽

Protein Protein Interaction ◽

Ensemble Approach ◽

Interaction Extraction

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All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

BMC Bioinformatics ◽

10.1186/1471-2105-9-s11-s2 ◽

2008 ◽

Vol 9 (S11) ◽

Author(s):

Antti Airola ◽

Sampo Pyysalo ◽

Jari Björne ◽

Tapio Pahikkala ◽

Filip Ginter ◽

...

Keyword(s):

Protein Interaction ◽

Graph Kernel ◽

Protein Protein Interaction ◽

Interaction Extraction

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Learning an enriched representation from unlabeled data for protein-protein interaction extraction

BMC Bioinformatics ◽

10.1186/1471-2105-11-s2-s7 ◽

2010 ◽

Vol 11 (S2) ◽

Author(s):

Yanpeng Li ◽

Xiaohua Hu ◽

Hongfei Lin ◽

Zhihao Yang

Keyword(s):

Protein Interaction ◽

Unlabeled Data ◽

Protein Protein Interaction ◽

Interaction Extraction

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A graph kernel for protein-protein interaction extraction

Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing - BioNLP '08 ◽

10.3115/1572306.1572308 ◽

2008 ◽

Author(s):

Antti Airola ◽

Sampo Pyysalo ◽

Jari Björne ◽

Tapio Pahikkala ◽

Filip Ginter ◽

...

Keyword(s):

Protein Interaction ◽

Graph Kernel ◽

Protein Protein Interaction ◽

Interaction Extraction

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Improving neural protein-protein interaction extraction with knowledge selection

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2019.107146 ◽

2019 ◽

Vol 83 ◽

pp. 107146

Author(s):

Huiwei Zhou ◽

Xuefei Li ◽

Weihong Yao ◽

Zhuang Liu ◽

Shixian Ning ◽

...

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

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POS-tags features for Protein-Protein Interaction Extraction from Biomedical Articles

2018 IEEE XXV International Conference on Electronics, Electrical Engineering and Computing (INTERCON) ◽

10.1109/intercon.2018.8526370 ◽

2018 ◽

Author(s):

Pedro Shiguihara-Juarez ◽

Nils Murrugarra-Llerena ◽

Alneu de Andrade Lopes

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

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