Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural Networks

Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 ◽

10.1145/3107411.3110418 ◽

2017 ◽

Author(s):

Hao Zhang ◽

Mary Qu Yang ◽

Xiaoyue Feng ◽

William Yang ◽

Weida Tong ◽

...

Keyword(s):

Neural Networks ◽

Protein Interaction ◽

Convolution Neural Networks ◽

Protein Protein Interaction ◽

Interaction Extraction

Download Full-text

Recurrent convolution neural networks for classification of protein-protein interaction articles from biomedical literature

2017 Third International Conference on Research in Computational Intelligence and Communication Networks (ICRCICN) ◽

10.1109/icrcicn.2017.8234505 ◽

2017 ◽

Author(s):

Sabenabanu Abdulkadhar ◽

Gurusamy Murugesan ◽

Jeyakumar Natarajan

Keyword(s):

Neural Networks ◽

Protein Interaction ◽

Biomedical Literature ◽

Convolution Neural Networks ◽

Protein Protein Interaction

Download Full-text

Protein-protein interaction extraction based on actively transfer learning

2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2015.7359936 ◽

2015 ◽

Author(s):

Lishuang Li ◽

Jieqiong Zheng ◽

Dingxin Song ◽

Rui Guo ◽

Degen Huang

Keyword(s):

Transfer Learning ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

Download Full-text

WinBinVec: Cancer-Associated Protein-Protein Interaction Extraction and Identification of 20 Various Cancer Types and Metastasis Using Different Deep Learning Models

IEEE Journal of Biomedical and Health Informatics ◽

10.1109/jbhi.2021.3093441 ◽

2021 ◽

pp. 1-1

Author(s):

Sina Abdollahi ◽

Peng-Chan Lin ◽

Jung-Hsien Chiang

Keyword(s):

Deep Learning ◽

Protein Interaction ◽

Learning Models ◽

Protein Protein Interaction ◽

Interaction Extraction ◽

Download Full-text

Walk-weighted subsequence kernels for protein-protein interaction extraction

BMC Bioinformatics ◽

10.1186/1471-2105-11-107 ◽

2010 ◽

Vol 11 (1) ◽

Author(s):

Seonho Kim ◽

Juntae Yoon ◽

Jihoon Yang ◽

Seog Park

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Extraction

Download Full-text

PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2014.062890 ◽

2014 ◽

Vol 10 (1) ◽

pp. 98

Author(s):

Chuan Xi Li ◽

Peng Chen ◽

Ru Jing Wang ◽

Xiu Jie Wang ◽

Ya Ru Su ◽

...

Keyword(s):

Protein Interaction ◽

Two Stage ◽

Protein Protein Interaction ◽

Interaction Extraction ◽

Relation Ontology

Download Full-text

Deep Convolution Neural Networks for Drug-Drug Interaction Extraction

2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2018.8621405 ◽

2018 ◽

Author(s):

Xia Sun ◽

Long Ma ◽

Xiaodong Du ◽

Jun Feng ◽

Ke Dong

Keyword(s):

Neural Networks ◽

Drug Interaction ◽

Convolution Neural Networks ◽

Interaction Extraction ◽

Drug Drug Interaction

Download Full-text

Identification of Novel Therapeutic Targets in Myelodysplastic Syndrome Using Protein-Protein Interaction Approach and Neural Networks

Journal of Computer Science & Systems Biology ◽

10.4172/jcsb.1000270 ◽

2018 ◽

Vol 11 (2) ◽

Author(s):

Ali A ◽

Junaid M ◽

Khan A ◽

Kaushik AC ◽

Mehmood A ◽

...

Keyword(s):

Neural Networks ◽

Myelodysplastic Syndrome ◽

Protein Interaction ◽

Therapeutic Targets ◽

Protein Protein Interaction ◽

Interaction Approach ◽

Novel Therapeutic

Download Full-text

Aligning protein-protein interaction networks using random neural networks

2012 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2012.6392664 ◽

2012 ◽

Author(s):

Hang T. T. Phan ◽

Michael J. E. Stemberg ◽

Eroi Gelenbe

Keyword(s):

Neural Networks ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Random Neural Networks

Download Full-text

Mixture of logistic models and an ensemble approach for protein-protein interaction extraction

Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '11 ◽

10.1145/2147805.2147853 ◽

2011 ◽

Author(s):

Lindsey Bell ◽

Jinfeng Zhang ◽

Xufeng Niu

Keyword(s):

Protein Interaction ◽

Logistic Models ◽

Protein Protein Interaction ◽

Ensemble Approach ◽

Interaction Extraction

Download Full-text

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

BMC Bioinformatics ◽

10.1186/1471-2105-9-s11-s2 ◽

2008 ◽

Vol 9 (S11) ◽

Author(s):

Antti Airola ◽

Sampo Pyysalo ◽

Jari Björne ◽

Tapio Pahikkala ◽

Filip Ginter ◽

...

Keyword(s):

Protein Interaction ◽

Graph Kernel ◽

Protein Protein Interaction ◽

Interaction Extraction

Download Full-text