Efficient and accurate greedy search methods for mining functional modules in protein interaction networks

BMC Bioinformatics ◽

10.1186/1471-2105-13-s10-s19 ◽

2012 ◽

Vol 13 (S10) ◽

Author(s):

Jieyue He ◽

Chaojun Li ◽

Baoliu Ye ◽

Wei Zhong

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Greedy Search ◽

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A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks

Bioinformatics Research and Applications - Lecture Notes in Computer Science ◽

10.1007/978-3-642-21260-4_32 ◽

2011 ◽

pp. 332-343

Author(s):

Chaojun Li ◽

Jieyue He ◽

Baoliu Ye ◽

Wei Zhong

Keyword(s):

Protein Interaction ◽

Search Method ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

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A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks

Bioinformatics Research and Applications - Lecture Notes in Computer Science ◽

10.1007/978-3-540-79450-9_20 ◽

2008 ◽

pp. 208-219 ◽

Author(s):

Min Li ◽

Jianxin Wang ◽

Jianer Chen

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Theoretic Method ◽

Graph Theoretic

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Functional Modules in Protein–Protein Interaction Networks

Systems Biology for Signaling Networks - Systems Biology ◽

10.1007/978-1-4419-5797-9_14 ◽

2010 ◽

pp. 353-369

Author(s):

Tobias Müller ◽

Marcus Dittrich

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Identification of Essential Protein based on Functional Modules and Weighted Protein-Protein Interaction Networks

International Journal of u- and e- Service Science and Technology ◽

10.14257/ijunesst.2016.9.8.29 ◽

2016 ◽

Vol 9 (8) ◽

pp. 343-350 ◽

Author(s):

Yi Pan ◽

Sai Hu ◽

Bihai Zhao

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Essential Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Dynamic identifying protein functional modules based on adaptive density modularity in protein-protein interaction networks

BMC Bioinformatics ◽

10.1186/1471-2105-16-s12-s5 ◽

2015 ◽

Vol 16 (S12) ◽

Author(s):

Xianjun Shen ◽

Li Yi ◽

Yang Yi ◽

Jincai Yang ◽

Tingting He ◽

...

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Detecting Functional Modules from Protein Interaction Networks

10.1109/imsccs.2006.55 ◽

2006 ◽

Author(s):

Feng Luo ◽

Richard H. Scheuermann

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules

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An improved AP algorithm for identifying overlapping functional modules in protein-protein interaction networks

IEEE 10th INTERNATIONAL CONFERENCE ON SIGNAL PROCESSING PROCEEDINGS ◽

10.1109/icosp.2010.5656663 ◽

2010 ◽

Author(s):

Yu Wang ◽

Lin Gao

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Integrative Approach for Detection of Functional Modules from Protein-Protein Interaction Networks

Protein-Protein Interactions - Computational and Experimental Tools ◽

10.5772/37858 ◽

2012 ◽

Author(s):

Zelmina Lubovac

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Integrative Approach ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Research on Algorithms for Complexes and Functional Modules Prediction in Protein-Protein Interaction Networks

Chinese Journal of Computers ◽

10.3724/sp.j.1016.2011.01239 ◽

2011 ◽

Vol 34 (7) ◽

pp. 1239-1251 ◽

Author(s):

Liang YU ◽

Lin GAO ◽

Peng-Gang SUN

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Functional Modules ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering Coefficient

Bioinformatics Research and Applications - Lecture Notes in Computer Science ◽

10.1007/978-3-642-01551-9_8 ◽

2009 ◽

pp. 75-86 ◽

Author(s):

Min Li ◽

Jianxin Wang ◽

Jianer Chen ◽

Yi Pan

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Hierarchical Organization ◽

Clustering Coefficient ◽

Interaction Networks ◽

Functional Modules

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