Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment

BMC Bioinformatics ◽

10.1186/1471-2105-15-189 ◽

2014 ◽

Vol 15 (1) ◽

Author(s):

Osamu Gotoh ◽

Mariko Morita ◽

David R Nelson

Keyword(s):

Sequence Alignment ◽

Gene Structure ◽

Protein Sequence ◽

Structure Prediction ◽

Gene Structure Prediction ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Eukaryotic Gene ◽

Multiple Protein Sequence Alignment ◽

Eukaryotic Gene Structure

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Comparative analysis of seven multiple protein sequence alignment servers: clues to enhance reliability of predictions

Bioinformatics ◽

10.1093/bioinformatics/14.4.357 ◽

1998 ◽

Vol 14 (4) ◽

pp. 357-366 ◽

Author(s):

P. Briffeuil ◽

G. Baudoux ◽

C. Lambert ◽

X. De Bolle ◽

C. Vinals ◽

...

Keyword(s):

Comparative Analysis ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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Multiple Protein Sequence Alignment with MSAProbs

Methods in Molecular Biology - Multiple Sequence Alignment Methods ◽

10.1007/978-1-62703-646-7_14 ◽

2013 ◽

pp. 211-218 ◽

Author(s):

Yongchao Liu ◽

Bertil Schmidt

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment

Semantic Technology - Lecture Notes in Computer Science ◽

10.1007/978-3-030-04284-4_29 ◽

2018 ◽

pp. 418-426 ◽

Author(s):

Atsuko Yamaguchi ◽

Hiroyuki Toh

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Search System ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340140216 ◽

1992 ◽

Vol 14 (2) ◽

pp. 309-323 ◽

Author(s):

Robert B. Russell ◽

Geoffrey J. Barton

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Tertiary Structure ◽

Structure Comparison ◽

Protein Sequence Alignment ◽

Confidence Levels ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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Multiple protein sequence alignment using double-dynamic programming

Computers & Chemistry ◽

10.1016/s0097-8485(00)80003-0 ◽

2000 ◽

Vol 24 (1) ◽

pp. 3-12 ◽

Author(s):

William R. Taylor ◽

Gisle Sælensminde ◽

Ingvar Eidhammer

Keyword(s):

Dynamic Programming ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2009.68 ◽

2011 ◽

Vol 8 (4) ◽

pp. 1108-1119 ◽

Author(s):

Li-San Wang ◽

J Leebens-Mack ◽

P Kerr Wall ◽

K Beckmann ◽

C W de Pamphilis ◽

...

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment ◽

Phylogenetic Estimation ◽

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Comparative analysis of multiple protein-sequence alignment methods.

Molecular Biology and Evolution ◽

10.1093/oxfordjournals.molbev.a040138 ◽

1994 ◽

Keyword(s):

Comparative Analysis ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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Efficient and Effective Multiple Protein Sequence Alignment Model Using Dynamic Progressive Approach with Novel Look Back Ahead Scoring System

Lecture Notes in Computer Science - Pattern Recognition and Machine Intelligence ◽

10.1007/978-3-319-69900-4_50 ◽

2017 ◽

pp. 397-404

Author(s):

Sanjay Bankapur ◽

Nagamma Patil

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Scoring System ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Look Back ◽

Multiple Protein Sequence Alignment ◽

Alignment Model

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[20] Multiple protein sequence alignment: Algorithms and gap insertion

Methods in Enzymology - Computer Methods for Macromolecular Sequence Analysis ◽

10.1016/s0076-6879(96)66022-4 ◽

1996 ◽

pp. 343-367 ◽

Author(s):

William R. Taylor

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Alignment Algorithms ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment

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MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions

BMC Bioinformatics ◽

10.1186/s12859-015-0826-3 ◽

2015 ◽

Vol 16 (1) ◽

Author(s):

Mufleh Al-Shatnawi ◽

M. Omair Ahmad ◽

M. N. S. Swamy

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Multiple Protein ◽

Multiple Protein Sequence Alignment ◽

Flanking Regions

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