Recent Computational Trends in Biological Sequence Alignment

Multiple Biological Sequence Alignment: Scoring Functions, Algorithms and Applications

10.1002/9781119273769 ◽

2016 ◽

Cited By ~ 4

Author(s):

Ken Nguyen ◽

Xuan Guo ◽

Yi Pan

Keyword(s):

Sequence Alignment ◽

Scoring Functions ◽

Biological Sequence

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A Highly Parameterized and Efficient FPGA-Based Skeleton for Pairwise Biological Sequence Alignment

IEEE Transactions on Very Large Scale Integration (VLSI) Systems ◽

10.1109/tvlsi.2008.2005314 ◽

2009 ◽

Vol 17 (4) ◽

pp. 561-570 ◽

Cited By ~ 81

Author(s):

K. Benkrid ◽

Ying Liu ◽

A. Benkrid

Keyword(s):

Sequence Alignment ◽

Biological Sequence

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Recent Advances in the Walking Tree Method for Biological Sequence Alignment

Computer Aided Systems Theory - EUROCAST 2003 - Lecture Notes in Computer Science ◽

10.1007/978-3-540-45210-2_32 ◽

2003 ◽

pp. 349-359 ◽

Cited By ~ 1

Author(s):

Paul Cull ◽

Tai Hsu

Keyword(s):

Sequence Alignment ◽

Biological Sequence ◽

Recent Advances ◽

Tree Method

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Research and Implementation of Biological Sequence Alignment Algorithm

International Conference on Measurement and Control Engineering 2nd (ICMCE 2011) ◽

10.1115/1.859858.paper32 ◽

2011 ◽

pp. 221-228

Keyword(s):

Sequence Alignment ◽

Alignment Algorithm ◽

Biological Sequence ◽

Sequence Alignment Algorithm

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High performance and resource efficient biological sequence alignment

2010 Annual International Conference of the IEEE Engineering in Medicine and Biology ◽

10.1109/iembs.2010.5626740 ◽

2010 ◽

Author(s):

L Hasan ◽

Z Al-Ars ◽

M Taouil

Keyword(s):

Sequence Alignment ◽

High Performance ◽

Biological Sequence

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Biological sequence alignment on the computational grid using the GrADS framework

Future Generation Computer Systems ◽

10.1016/j.future.2005.02.002 ◽

2005 ◽

Vol 21 (6) ◽

pp. 980-986 ◽

Cited By ~ 14

Author(s):

Asim YarKhan ◽

Jack J. Dongarra

Keyword(s):

Sequence Alignment ◽

Computational Grid ◽

Biological Sequence

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POSTER: BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data

2019 28th International Conference on Parallel Architectures and Compilation Techniques (PACT) ◽

10.1109/pact.2019.00044 ◽

2019 ◽

Cited By ~ 4

Author(s):

Roman Kaplan ◽

Leonid Yavits ◽

Ran Ginosar

Keyword(s):

Sequence Alignment ◽

Large Scale ◽

Genomic Data ◽

Biological Sequence

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Design and Implementation of a Highly Parameterised FPGA-Based Skeleton for Pairwise Biological Sequence Alignment

15th Annual IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2007) ◽

10.1109/fccm.2007.6 ◽

2007 ◽

Cited By ~ 3

Author(s):

Khaled Benkrid ◽

Ying Liu ◽

Abdsamad Benkrid

Keyword(s):

Sequence Alignment ◽

Biological Sequence ◽

Design And Implementation

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Designing High-Performance Concurrent Strategies for Biological Sequence Alignment Problems on Networked Computing Platforms

Grid Computing for Bioinformatics and Computational Biology ◽

10.1002/9780470191637.ch2 ◽

2008 ◽

pp. 23-49

Author(s):

Bharadwaj Veeravalli

Keyword(s):

Sequence Alignment ◽

High Performance ◽

Biological Sequence ◽

Networked Computing ◽

Computing Platforms

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PIM-Aligner: A Processing-in-MRAM Platform for Biological Sequence Alignment

2020 Design, Automation & Test in Europe Conference & Exhibition (DATE) ◽

10.23919/date48585.2020.9116303 ◽

2020 ◽

Author(s):

Shaahin Angizi ◽

Jiao Sun ◽

Wei Zhang ◽

Deliang Fan

Keyword(s):

Sequence Alignment ◽

Biological Sequence

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