Species Classification using DNA Barcoding and Profile Hidden Markov Models

Faculty Opinions recommendation of Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1027329.329473 ◽

2005 ◽

Author(s):

Nick Grishin

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Protein Sequences ◽

Genetic Barcode Identification With Profile Hidden Markov Models

10.31979/etd.9fn2-bg55 ◽

2018 ◽

Author(s):

Vishrut Sharma

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Rational Design of Profile Hidden Markov Models for Viral Classification and Discovery

Bioinformatics ◽

10.36255/exonpublications.bioinformatics.2021.ch9 ◽

2021 ◽

pp. 151-170

Author(s):

Liliane Santana Oliveira ◽

Arthur Gruber

Keyword(s):

Hidden Markov Models ◽

Rational Design ◽

Markov Models ◽

Hidden Markov ◽

MBPpred: Proteome-wide detection of membrane lipid-binding proteins using profile Hidden Markov Models

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics ◽

10.1016/j.bbapap.2016.03.015 ◽

2016 ◽

Vol 1864 (7) ◽

pp. 747-754 ◽

Cited By ~ 8

Author(s):

Katerina C. Nastou ◽

Georgios N. Tsaousis ◽

Nikos C. Papandreou ◽

Stavros J. Hamodrakas

Keyword(s):

Hidden Markov Models ◽

Binding Proteins ◽

Markov Models ◽

Hidden Markov ◽

Membrane Lipid ◽

Lipid Binding ◽

Lipid Binding Proteins

Profile Hidden Markov Models are Not Identifiable

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2019.2933821 ◽

2019 ◽

pp. 1-1

Author(s):

Srilakshmi Pattabiraman ◽

Tandy Warnow

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Profile hidden Markov models and metamorphic virus detection

Journal in Computer Virology ◽

10.1007/s11416-008-0105-1 ◽

2008 ◽

Vol 5 (2) ◽

pp. 151-169 ◽

Cited By ~ 54

Author(s):

Srilatha Attaluri ◽

Scott McGhee ◽

Mark Stamp

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Virus Detection ◽

Metamorphic Virus ◽

Reconfigurable Hardware Accelerator for Profile Hidden Markov Models

Arabian Journal for Science and Engineering ◽

10.1007/s13369-016-2162-y ◽

2016 ◽

Vol 41 (8) ◽

pp. 3267-3277 ◽

Cited By ~ 1

Author(s):

Atef Ibrahim ◽

Hamed Elsimary ◽

Abdullah Aljumah ◽

Fayez Gebali

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Reconfigurable Hardware ◽

Hardware Accelerator ◽

Behavior-based Malware Analysis using Profile Hidden Markov Models

Proceedings of the 10th International Conference on Security and Cryptography ◽

10.5220/0004528201950206 ◽

2013 ◽

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Malware Analysis ◽

Behavior Based

CutProtFam-Pred: Detection and classification of putative structural cuticular proteins from sequence alone, based on profile Hidden Markov Models

Insect Biochemistry and Molecular Biology ◽

10.1016/j.ibmb.2014.06.004 ◽

2014 ◽

Vol 52 ◽

pp. 51-59 ◽

Cited By ~ 67

Author(s):

Zoi S. Ioannidou ◽

Margarita C. Theodoropoulou ◽

Nikos C. Papandreou ◽

Judith H. Willis ◽

Stavros J. Hamodrakas

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Cuticular Proteins

A Novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models

SAR and QSAR in Environmental Research ◽

10.1080/10629360310001623999 ◽

2003 ◽

Vol 14 (5-6) ◽

pp. 413-420 ◽

Cited By ~ 24

Author(s):

P.K. Papasaikas ◽

P.G. Bagos ◽

Z.I. Litou ◽

S.J. Hamodrakas

Keyword(s):

Hidden Markov Models ◽

Markov Models ◽

Hidden Markov ◽

Novel Method ◽

Family Classification