scholarly journals Relaxation of backbone bond geometry improves protein energy landscape modeling

2013 ◽  
Vol 23 (1) ◽  
pp. 47-55 ◽  
Author(s):  
Patrick Conway ◽  
Michael D. Tyka ◽  
Frank DiMaio ◽  
David E. Konerding ◽  
David Baker
Keyword(s):  
Energy Landscape ◽  
Landscape Modeling ◽  
Protein Energy ◽  
Protein Energy Landscape

scholarly journals Mechanistic Basis for Ubiquitin Modulation of a Protein Energy Landscape

2021 ◽  
Vol 120 (3) ◽  
pp. 126a
Author(s):  
Emma Carroll ◽  
Naomi R. Latorraca ◽  
Johanna Lindner ◽  
Jeff Pelton ◽  
Brendan Maguire ◽  
...  
Keyword(s):  
Energy Landscape ◽  
Protein Energy ◽  
Mechanistic Basis ◽  
Protein Energy Landscape

scholarly journals The roughness of the protein energy landscape results in anomalous diffusion of the polypeptide backbone

2015 ◽  
Vol 17 (2) ◽  
pp. 762-782 ◽  
Author(s):  
Martin Volk ◽  
Lilia Milanesi ◽  
Jonathan P. Waltho ◽  
Christopher A. Hunter ◽  
Godfrey S. Beddard
Keyword(s):  
Anomalous Diffusion ◽  
Disulfide Bonds ◽  
Energy Landscape ◽  
Protein Energy ◽  
Polypeptide Backbone ◽  
Protein Disulfide Bonds ◽  
Protein Disulfide ◽  
Protein Energy Landscape

Recombination of photolysed protein disulfide bonds confirms subdiffusional backbone motion and measures the roughness of the protein's energy landscape.

PELE:  Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique

2005 ◽  
Vol 1 (6) ◽  
pp. 1304-1311 ◽  
Author(s):  
Kenneth W. Borrelli ◽  
Andreas Vitalis ◽  
Raul Alcantara ◽  
Victor Guallar
Keyword(s):  
Monte Carlo ◽  
Energy Landscape ◽  
Protein Energy ◽  
Protein Energy Landscape

scholarly journals Evidence of Simultaneous Spectral Hole Burning Involving Two Tiers of the Protein Energy Landscape in Cytochrome b6f

2019 ◽  
Vol 123 (51) ◽  
pp. 10930-10938
Author(s):  
Golia Shafiei ◽  
Alexander Levenberg ◽  
Maria A. Lujan ◽  
Rafael Picorel ◽  
Valter Zazubovich
Keyword(s):  
Energy Landscape ◽  
Hole Burning ◽  
Spectral Hole Burning ◽  
Cytochrome B6f ◽  
Spectral Hole ◽  
Protein Energy ◽  
Protein Energy Landscape
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