New method for protein secondary structure assignment based on a simple topological descriptor

Todd Taylor; Margarita Rivera; Glenda Wilson; Iosif I. Vaisman

doi:10.1002/prot.20471

New method for protein secondary structure assignment based on a simple topological descriptor

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.20471 ◽

2005 ◽

Vol 60 (3) ◽

pp. 513-524 ◽

Cited By ~ 17

Author(s):

Todd Taylor ◽

Margarita Rivera ◽

Glenda Wilson ◽

Iosif I. Vaisman

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

New Method ◽

Topological Descriptor ◽

Secondary Structure Assignment ◽

Structure Assignment

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Protein secondary structure assignment using pc-polyline and convolutional neuron network

10.22541/au.160266787.79641281/v1 ◽

2020 ◽

Author(s):

Lincong Wang ◽

Chen Cao ◽

Shuxue Zuo

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

Neuron Network ◽

Secondary Structure Assignment ◽

Structure Assignment

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Knowledge-based protein secondary structure assignment

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.340230412 ◽

1995 ◽

Vol 23 (4) ◽

pp. 566-579 ◽

Cited By ~ 1652

Author(s):

Dmitrij Frishman ◽

Patrick Argos

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

Knowledge Based ◽

Secondary Structure Assignment ◽

Structure Assignment

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A new method of secondary structure assignment based on the delaunay tessellation of protein structures

Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. ◽

10.1109/csb.2004.1332553 ◽

2004 ◽

Author(s):

T. Taylor ◽

I. Vaisman

Keyword(s):

Secondary Structure ◽

Protein Structures ◽

New Method ◽

Delaunay Tessellation ◽

Secondary Structure Assignment ◽

Structure Assignment

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3P116 The correlation of the novel protein secondary structure assignment and the cleavage site of protein sequence with protease

Seibutsu Butsuri ◽

10.2142/biophys.44.s218_4 ◽

2004 ◽

Vol 44 (supplement) ◽

pp. S218

Author(s):

R. Hong ◽

H. Osoegawa ◽

K. Konko ◽

S. Ohuchi

Keyword(s):

Secondary Structure ◽

Protein Sequence ◽

Cleavage Site ◽

Protein Secondary Structure ◽

The Novel ◽

Secondary Structure Assignment ◽

Structure Assignment ◽

Novel Protein

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PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive Cα atoms

Computational Biology and Chemistry ◽

10.1016/j.compbiolchem.2008.07.027 ◽

2008 ◽

Vol 32 (6) ◽

pp. 406-411 ◽

Cited By ~ 14

Author(s):

Sayed-Rzgar Hosseini ◽

Mehdi Sadeghi ◽

Hamid Pezeshk ◽

Changiz Eslahchi ◽

Mahnaz Habibi

Keyword(s):

Secondary Structure ◽

Three Dimensional ◽

Protein Secondary Structure ◽

Secondary Structure Assignment ◽

Structure Assignment

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Protein secondary structure assignment through Voronoï tessellation

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.10566 ◽

2004 ◽

Vol 55 (3) ◽

pp. 519-528 ◽

Cited By ~ 37

Author(s):

Franck Dupuis ◽

Jean-François Sadoc ◽

Jean-Paul Mornon

Keyword(s):

Secondary Structure ◽

Voronoi Tessellation ◽

Protein Secondary Structure ◽

Secondary Structure Assignment ◽

Structure Assignment

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3P115 The correlation of the novel protein secondary structure assignment and CD spectrum of protein

Seibutsu Butsuri ◽

10.2142/biophys.44.s218_3 ◽

2004 ◽

Vol 44 (supplement) ◽

pp. S218

Author(s):

H. Osoegawa ◽

K. Konko ◽

S. Ohuchi

Keyword(s):

Secondary Structure ◽

Protein Secondary Structure ◽

The Novel ◽

Cd Spectrum ◽

Secondary Structure Assignment ◽

Structure Assignment ◽

Novel Protein

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Protein secondary structure assignment using pc ‐polyline and convolutional neural network

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.26079 ◽

2021 ◽

Author(s):

Lincong Wang ◽

Chen Cao ◽

Shuxue Zuo

Keyword(s):

Neural Network ◽

Secondary Structure ◽

Convolutional Neural Network ◽

Protein Secondary Structure ◽

Secondary Structure Assignment ◽

Structure Assignment

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Secondary Structure Assignment of Amyloid-β Peptide Using Chemical Shifts

Journal of Chemical Theory and Computation ◽

10.1021/ct200156e ◽

2011 ◽

Vol 7 (5) ◽

pp. 1552-1563 ◽

Cited By ~ 12

Author(s):

Geoffrey P. F. Wood ◽

Ursula Rothlisberger

Keyword(s):

Secondary Structure ◽

Chemical Shifts ◽

Amyloid Β ◽

Amyloid Β Peptide ◽

Secondary Structure Assignment ◽

Structure Assignment

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STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

Nucleic Acids Research ◽

10.1093/nar/gkh429 ◽

2004 ◽

Vol 32 (Web Server) ◽

pp. W500-W502 ◽

Cited By ~ 538

Author(s):

M. Heinig ◽

D. Frishman

Keyword(s):

Secondary Structure ◽

Web Server ◽

Secondary Structure Assignment ◽

Structure Assignment ◽

Atomic Coordinates

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