Three populations of <em>Abies cilicica</em> subsp. <em>isaurica</em> and four of <em>A. cilicica</em> subsp. <em>cilicica</em> were analyzed using 35 morphological and anatomical needle characters with the implementation of multivariate statistical methods to verify the differences between subspecies. Moreover, the possible geographic differentiation of <em>A. cilicica</em> subsp. <em>cilicica</em> populations from the East Taurus and Lebanon Mountains was examined. <em>Abies cilicica</em> subsp. <em>isaurica</em> has been distinguished from <em>A. cilicica</em> subsp. <em>cilicica</em> by its glabrous young shoots and resinous buds. We detected that needles of <em>A. cilicica</em> subsp. <em>isaurica</em> are longer, broader and thicker, with a higher number of stomata rows, and larger cells of the epidermis, hypodermis and endodermis than <em>A. cilicica</em> subsp. <em>cilicica</em>. Additionally, <em>A. cilicica</em> subsp. <em>isaurica</em> needles have frequently rounded to obtuse-acute apex and resinous canals positioned more centrally inside the mesophyll than needles of <em>A. cilicica</em> subsp. <em>cilicica</em>. This indicates that a set of most of the tested needle characters can be used to distinguish the subspecies; however, any of characters enable that when used separately. Morphological and anatomical distinctiveness between these two taxa justify their recognition at the subspecies rank. Additionally, the populations of <em>A. cilicica</em> subsp. <em>cilicica</em> from the East Taurus and Lebanon are morphologically different. This geographic differentiation of populations is congruent with results provided by genetic analyses of nuclear microsatellites markers (nSSR).