Gene Functional Similarity Analysis by Definition-based Semantic Similarity Measurement of GO Terms

2014 ◽  
pp. 203-214 ◽  
Author(s):  
Ahmad Pesaranghader ◽  
Ali Pesaranghader ◽  
Azadeh Rezaei ◽  
Danoosh Davoodi
Keyword(s):  
Semantic Similarity ◽  
Functional Similarity ◽  
Similarity Measurement ◽  
Similarity Analysis ◽  
Semantic Similarity Measurement ◽  
Go Terms

scholarly journals An integrated information-based similarity measurement of gene ontology terms

2015 ◽  
Vol 12 (4) ◽  
pp. 1235-1253 ◽  
Author(s):  
Shu-Bo Zhang ◽  
Jian-Huang Lai
Keyword(s):  
Gene Ontology ◽  
Semantic Similarity ◽  
Semantic Information ◽  
Gene Expression Dataset ◽  
Similarity Measurement ◽  
Depth Information ◽  
Go Terms ◽  
Validation Experiments ◽  
Integrated Information ◽  
Common Ancestors

Measuring the semantic similarity between pairs of terms in Gene Ontology (GO) can help to compare genes that can not be compared by other computational methods. In this study, we proposed an integrated information-based similarity measurement (IISM) to calculate the semantic similarity between two GO terms by taking into account multiple common ancestors that they share, and aggregating the semantic information and depth information of the non-redundant common ancestors. Our method searches for non-redundant common ancestors in an effective way. Validation experiments were conducted on both gene expression dataset and pathway dataset, and the experimental results suggest the superiority of our method against some existing methods.

Semantic similarity measurement: an intrinsic information content model

2020 ◽  
Vol 14 (3) ◽  
pp. 218
Author(s):  
Abhijit Adhikari ◽  
Biswanath Dutta ◽  
Animesh Dutta ◽  
Deepjyoti Mondal
Keyword(s):  
Information Content ◽  
Semantic Similarity ◽  
Similarity Measurement ◽  
Content Model ◽  
Semantic Similarity Measurement

Semantic similarity measurement: an intrinsic information content model

2020 ◽  
Vol 14 (3) ◽  
pp. 218
Author(s):  
Deepjyoti Mondal ◽  
Animesh Dutta ◽  
Abhijit Adhikari ◽  
Biswanath Dutta
Keyword(s):  
Information Content ◽  
Semantic Similarity ◽  
Similarity Measurement ◽  
Content Model ◽  
Semantic Similarity Measurement

A Novel Neurofuzzy Approach for Semantic Similarity Measurement

2021 ◽  
pp. 192-203
Author(s):  
Jorge Martinez-Gil ◽  
Riad Mokadem ◽  
Josef Küng ◽  
Abdelkader Hameurlain
Keyword(s):  
Semantic Similarity ◽  
Similarity Measurement ◽  
Semantic Similarity Measurement

Semantic Similarity Measurement and Geospatial Applications

2008 ◽  
Vol 12 (6) ◽  
pp. 651-659 ◽  
Author(s):  
Krzysztof Janowicz ◽  
Martin Raubal ◽  
Angela Schwering ◽  
Werner Kuhn
Keyword(s):  
Semantic Similarity ◽  
Similarity Measurement ◽  
Semantic Similarity Measurement
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