Gene Regulatory Network Identification from Gene Expression Time Series Data Using Swarm Intelligence

Adaptation, Learning, and Optimization - Handbook of Swarm Intelligence ◽

10.1007/978-3-642-17390-5_23 ◽

2011 ◽

pp. 517-542

Author(s):

Debasish Datta ◽

Amit Konar ◽

Swagatam Das ◽

B. K. Panigrahi

Keyword(s):

Gene Expression ◽

Time Series ◽

Swarm Intelligence ◽

Regulatory Network ◽

Time Series Data ◽

Series Data ◽

Gene Expression Time Series ◽

Network Identification ◽

Gene Regulatory ◽

Expression Time

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An improved identification technique of gene regulatory network from gene expression time series data using multi-objective differential evolution

2010 10th International Conference on Hybrid Intelligent Systems ◽

10.1109/his.2010.5601067 ◽

2010 ◽

Author(s):

Debasish Datta ◽

Amit Konar ◽

Atulya Nagar ◽

Archana Bisoyi

Keyword(s):

Gene Expression ◽

Time Series ◽

Differential Evolution ◽

Regulatory Network ◽

Time Series Data ◽

Series Data ◽

Gene Expression Time Series ◽

Identification Technique ◽

Gene Regulatory ◽

Expression Time

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Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data

Bioinformatics Research and Development - Lecture Notes in Computer Science ◽

10.1007/978-3-540-71233-6_1 ◽

2007 ◽

pp. 1-15 ◽

Author(s):

Nicole Radde ◽

Lars Kaderali

Keyword(s):

Gene Expression ◽

Time Series ◽

Bayesian Inference ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Time Series Data ◽

Series Data ◽

Gene Expression Time Series ◽

Gene Regulatory ◽

Expression Time

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Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data

Mathematics and Visualization - Visualization in Medicine and Life Sciences ◽

10.1007/978-3-540-72630-2_17 ◽

2008 ◽

pp. 293-311 ◽

Author(s):

Michel A. Westenberg ◽

Sacha A. F. T. van Hijum ◽

Andrzej T. Lulko ◽

Oscar P. Kuipers ◽

Jos B. T. M. Roerdink

Keyword(s):

Gene Expression ◽

Time Series ◽

Gene Regulatory Networks ◽

Regulatory Networks ◽

Time Series Data ◽

Interactive Visualization ◽

Series Data ◽

Gene Expression Time Series ◽

Gene Regulatory ◽

Expression Time

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An Integrative DTW-based imputation method for gene expression time series data

2012 6th IEEE INTERNATIONAL CONFERENCE INTELLIGENT SYSTEMS ◽

10.1109/is.2012.6335145 ◽

2012 ◽

Author(s):

Elena Kostadinova ◽

Veselka Boeva ◽

Liliana Boneva ◽

Elena Tsiporkova

Keyword(s):

Gene Expression ◽

Time Series ◽

Time Series Data ◽

Imputation Method ◽

Series Data ◽

Gene Expression Time Series ◽

Expression Time

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GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories

IEEE Transactions on Visualization and Computer Graphics ◽

10.1109/tvcg.2009.146 ◽

2009 ◽

Vol 15 (6) ◽

pp. 905-912 ◽

Author(s):

Bohyoung Kim ◽

Bongshin Lee ◽

S. Knoblach ◽

E. Hoffman ◽

Jinwook Seo

Keyword(s):

Gene Expression ◽

Time Series ◽

Time Series Data ◽

Series Data ◽

Data Repositories ◽

Web Based ◽

Gene Expression Time Series ◽

Visual Interface ◽

Expression Time

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A Tutorial to Identify Nonlinear Associations in Gene Expression Time Series Data

Transcription Factor Regulatory Networks - Methods in Molecular Biology ◽

10.1007/978-1-4939-0805-9_8 ◽

2014 ◽

pp. 87-95

Author(s):

André Fujita ◽

Satoru Miyano

Keyword(s):

Gene Expression ◽

Time Series ◽

Time Series Data ◽

Series Data ◽

Gene Expression Time Series ◽

Nonlinear Associations ◽

Expression Time

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Stochastic Dynamic Modeling of Short Gene Expression Time-Series Data

IEEE Transactions on NanoBioscience ◽

10.1109/tnb.2008.2000149 ◽

2008 ◽

Vol 7 (1) ◽

pp. 44-55 ◽

Author(s):

Zidong Wang* ◽

Fuwen Yang ◽

Daniel W. C. Ho ◽

Stephen Swift ◽

Allan Tucker ◽

...

Keyword(s):

Gene Expression ◽

Time Series ◽

Dynamic Modeling ◽

Time Series Data ◽

Series Data ◽

Stochastic Dynamic ◽

Gene Expression Time Series ◽

Expression Time

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Extraction of interaction information among genes from gene expression time series data

2009 World Congress on Nature & Biologically Inspired Computing (NaBIC) ◽

10.1109/nabic.2009.5393607 ◽

2009 ◽

Author(s):

Debasish Datta ◽

Amit Konar ◽

R. Janarthanan

Keyword(s):

Gene Expression ◽

Time Series ◽

Time Series Data ◽

Series Data ◽

Interaction Information ◽

Gene Expression Time Series ◽

Expression Time

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Canalizing Zhegalkin Polynomials as Models for Gene Expression Time Series Data

2006 IEEE International Conference on Engineering of Intelligent Systems ◽

10.1109/iceis.2006.1703187 ◽

2006 ◽

Author(s):

S. Faisal ◽

G. Lichtenberg ◽

H. Werner

Keyword(s):

Gene Expression ◽

Time Series ◽

Time Series Data ◽

Series Data ◽

Gene Expression Time Series ◽

Expression Time

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Alignment-Based Clustering of Gene Expression Time-Series Data

Data Mining in Biomedical Imaging, Signaling, and Systems ◽

10.1201/b10917-11 ◽

2011 ◽

pp. 227-261

Author(s):

Numanul Subhani ◽

Luis Rueda ◽

Alioune Ngom ◽

Conrad Burden

Keyword(s):

Gene Expression ◽

Time Series ◽

Time Series Data ◽

Series Data ◽

Gene Expression Time Series ◽

Expression Time

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