Overall Introduction and Rationale, with View from Computational Biology

2018 ◽  
pp. 3-9
Author(s):  
Haruki Nakamura
Keyword(s):  
Computational Biology

Two Candidate Approaches o Text Sequencing: An Addendum to “The Diachrony Debate: A Tutorial on Methods”

2018 ◽  
Vol 26 (2) ◽  
Author(s):  
Dean A. Forbes
Keyword(s):  
Computational Biology ◽  
Middle English ◽  
Diagnostic Tool ◽  
Reliable Method ◽  
Biblical Hebrew ◽  
Quantitative Comparison ◽  
Curve Analysis ◽  
Single Feature ◽  
S Curve ◽  
Temporal Ordering

In a recent essay published in this journal, I illustrated the limitations one may encounter when sequencing texts temporally using s-curve analysis. I also introduced seriation, a more reliable method for temporal ordering much used in both archaeology and computational biology. Lacking independently ordered Biblical Hebrew (BH) data to assess the potential power of seriation in the context of diachronic studies, I used classic Middle English data originally compiled by Ellegård. In this addendum, I reintroduce and extend s-curve analysis, applying it to one rather noisy feature of Middle English. My results support Holmstedt’s assertion that s-curve analysis can be a useful diagnostic tool in diachronic studies. Upon quantitative comparison, however, the five-feature seriation results derived in my former paper are found to be seven times more accurate than the single-feature s-curve results presented here. 

Computational Biology Tools for Identifying Specific Ligand Binding Residues for Novel Agrochemical and Drug Design

2015 ◽  
Vol 16 (8) ◽  
pp. 701-717 ◽  
Author(s):  
Izabella Pena Neshich ◽  
Leticia Nishimura ◽  
Fabio de Moraes ◽  
Jose Salim ◽  
Fabian Villalta-Romero ◽  
...  
Keyword(s):  
Drug Design ◽  
Computational Biology ◽  
Ligand Binding ◽  
Binding Residues ◽  
Specific Ligand

Prediction of Outcomes with a Computational Biology Model in Newly Diagnosed Glioblastoma Patients Treated with Radiation Therapy and Temozolomide

2020 ◽  
Vol 108 (3) ◽  
pp. 716-724
Author(s):  
Rifaquat Rahman ◽  
Lorenzo Trippa ◽  
Stephanie Alden ◽  
Geoffrey Fell ◽  
Taher Abbasi ◽  
...  
Keyword(s):  
Radiation Therapy ◽  
Computational Biology ◽  
Newly Diagnosed ◽  
Newly Diagnosed Glioblastoma

Stochastic Dynamics in Computational Biology

2020 ◽  
Author(s):  
Stefanie Winkelmann ◽  
Christof Schütte
Keyword(s):  
Computational Biology ◽  
Stochastic Dynamics

Towards practical applications in quantum computational biology

2021 ◽  
Vol 1 (2) ◽  
pp. 114-119
Author(s):  
A. K. Fedorov ◽  
M. S. Gelfand
Keyword(s):  
Computational Biology ◽  
Practical Applications
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