scholarly journals Stabilization of human immunodeficiency virus type 1 reverse transcriptase by site-directed mutagenesis

2013 ◽  
Vol 35 (12) ◽  
pp. 2165-2175 ◽  
Author(s):  
Kosaku Nishimura ◽  
Mayu Shinomura ◽  
Atsushi Konishi ◽  
Kiyoshi Yasukawa
Virology ◽  
2001 ◽  
Vol 280 (1) ◽  
pp. 97-106 ◽  
Author(s):  
Heidi Pelemans ◽  
Abram Aertsen ◽  
Kristel Van Laethem ◽  
Anne-Mieke Vandamme ◽  
Erik De Clercq ◽  
...  

2000 ◽  
Vol 74 (22) ◽  
pp. 10707-10713 ◽  
Author(s):  
Mark A. Winters ◽  
Kristi L. Coolley ◽  
Peng Cheng ◽  
Yvette A. Girard ◽  
Hasnah Hamdan ◽  
...  

ABSTRACT Point mutations and inserts in the β3-β4 region of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) are associated with resistance to nucleoside analog inhibitors. This report describes HIV-1 strains from seven patients that were found to have a 3-bp deletion in the β3-β4 region of the RT gene. These patient strains also had a mean of 6.2 drug resistance-associated mutations in their RT genes (range, 3 to 10 mutations). The deletion was most frequently found in strains with the Q151M mutation. Nonnucleoside RT inhibitor mutations were found in six of seven strains. Culture-based drug sensitivity assays showed that deletion-containing isolates had reduced susceptibility to four to eight RT inhibitors. Site-directed mutagenesis experiments showed that the deletion alone conferred reduced susceptibility to nucleoside analogs. Changes in the three-dimensional models of the RT deletion mutants were consistently observed at the β3-β4 loop and at helices C and E in both the presence and the absence of dTTP. Loss of hydrogen bonds between the RT and dTTP were also observed in the RT deletion mutant. These results suggest that the deletion in the RT gene contributes to resistance to several nucleoside analogs through a complex interaction with other mutations in the RT gene.


1998 ◽  
Vol 72 (6) ◽  
pp. 5093-5098 ◽  
Author(s):  
Sharon D. Kemp ◽  
Chaofu Shi ◽  
Stuart Bloor ◽  
P. Richard Harrigan ◽  
John W. Mellors ◽  
...  

ABSTRACT Recent clinical trials examining 3′-azido-3′-deoxythymidine (AZT, zidovudine, or Retrovir) combined withl-2′,3′-dideoxy-3′-thiacytidine (3TC or lamivudine) have shown that combination therapy with these nucleoside analogs affords significant virological and clinical benefits. The addition of 3TC to AZT delays AZT resistance in therapy-naive patients and can restore viral AZT susceptibility in patients who previously received AZT alone. In some AZT-experienced patients, the virological response to AZT-3TC therapy is not sustained and virus resistant to both drugs can be identified. To gain insight into the possible mechanism of dual resistance, we studied a recently described variant resistant to both AZT and 3TC and obtained by simultaneous passage of an AZT-resistant clinical isolate in cell culture with AZT and 3TC. Genetic mapping and site-directed mutagenesis experiments demonstrated that a polymorphism at codon 333 (Gly to Glu) of human immunodeficiency virus type 1 reverse transcriptase (RT) was critical in facilitating dual resistance in a complex background of AZT and 3TC resistance mutations. To assess the potential clinical relevance of RT codon 333 changes, we studied dually resistant viruses from patients taking AZT and 3TC. Genetic mapping of RT molecular clones derived from patients’ plasma samples demonstrated that in some cases polymorphism at codon 333 was responsible for facilitating dual resistance.


2000 ◽  
Vol 44 (3) ◽  
pp. 568-573 ◽  
Author(s):  
Kurt Hertogs ◽  
Stuart Bloor ◽  
Veronique De Vroey ◽  
Christel van den Eynde ◽  
Pascale Dehertogh ◽  
...  

ABSTRACT We describe a new human immunodeficiency virus type 1 (HIV-1) mutational pattern associated with phenotypic resistance to lamivudine (3TC) in the absence of the characteristic replacement of methionine by valine at position 184 (M184V) of reverse transcriptase. Combined genotypic and phenotypic analyses of clinical isolates revealed the presence of moderate levels of phenotypic resistance (between 4- and 50-fold) to 3TC in a subset of isolates that did not harbor the M184V mutation. Mutational cluster analysis and comparison with the phenotypic data revealed a significant correlation between moderate phenotypic 3TC resistance and an increased incidence of replacement of glutamic acid by aspartic acid or alanine and of valine by isoleucine at residues 44 and 118 of reverse transcriptase, respectively. This occurred predominantly in those isolates harboring zidovudine resistance-associated mutations (41L, 215Y). The requirement of the combination of mutations 41L and 215Y with mutations 44D and 44A and/or 118I for phenotypic 3TC resistance was confirmed by site-directed mutagenesis experiments. These data support the assumption that HIV-1 may have access to several different genetic pathways to escape drug pressure or that the increase in the frequency of particular mutations may affect susceptibility to drugs that have never been part of a particular regimen.


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