NMR relaxation parameters of methyl groups as a tool to map the interfaces of helix–helix interactions in membrane proteins

2017 ◽  
Vol 69 (3) ◽  
pp. 165-179 ◽  
Author(s):  
D. M. Lesovoy ◽  
K. S. Mineev ◽  
P. E. Bragin ◽  
O. V. Bocharova ◽  
E. V. Bocharov ◽  
...  
2016 ◽  
Vol 110 (3) ◽  
pp. 73a
Author(s):  
Xiaolin Xu ◽  
Andrey V. Struts ◽  
Aswini Kumar Giri ◽  
Trivikram R. Molugu ◽  
Charitha Guruge ◽  
...  

1994 ◽  
Vol 27 (2) ◽  
pp. 157-218 ◽  
Author(s):  
Mark A. Lemmon ◽  
Donald M. Engelman

The membrane-spanning portions of many integral membrane proteins consist of one or a number of transmembrane α-helices, which are expected to be independently stable on thermodynamic grounds. Side-by-side interactions between these transmembrane α-helices are important in the folding and assembly of such integral membrane proteins and their complexes. In considering the contribution of these helix–helix interactions to membrane protein folding and oligomerization, a distinction between the energetics and specificity should be recognized. A number of contributions to the energetics of transmembrane helix association within the lipid bilayer will be relatively non-specific, including those resulting from charge–charge interactions and lipid–packing effects. Specificity (and part of the energy) in transmembrane α-helix association, however, appears to rely mainly upon a detailed stereochemical fit between sets of dynamically accessible states of particular helices. In some cases, these interactions are mediated in part by prosthetic groups.


Author(s):  
Falk Hoffmann ◽  
Frans A. A. Mulder ◽  
Lars V. Schäfer

1979 ◽  
Vol 34 (5) ◽  
pp. 631-645 ◽  
Author(s):  
R. A. Wind ◽  
W. M. M. J. Bovée ◽  
J. C. F. Kupers ◽  
J. Smidt ◽  
Chr. Steenbergen

Abstract In this paper a solid state NMR relaxation study and inelastic neutron scattering (INS) experiments (the latter in the solid and liquid phase) are reported for a molecule containing methyl groups in different surroundings, namely 1,4-dimethoxy-2,6-dimethylbenzene. The results are compared with each other and with those of a liquid state NMR study reported earlier. It is found that in this way both the shapes and magnitudes of the various hindering potentials can be determined. The result is that the methyl groups 1, 2 and 4 possess a threefold cosine-shaped potential with heights given by 7.7, 9.0 and 15.0 kJ/mol according to the solid state NMR measurements (from the INS study the values 7.5, 7.5 and 16.0 kJ/mol were obtained). For methyl group 6 a mixture of a three-and six-fold symmetry had to be taken into account in order to explain the experiments. Except for methyl group 4 the liquid state NMR results deviate from those obtained with the other two techniques. A possible cause for this discrepancy is discussed. For the molecular structure it is concluded that the reorientations of the methyl groups 1 and 2 are influenced by mutual hindering and that the angle between the plane through the C4-O-C bond and the aromatic plane is small, whereas for the C1-O-C bond this angle is estimated to be about 70°.


Fuel ◽  
1998 ◽  
Vol 77 (9-10) ◽  
pp. 1001-1003 ◽  
Author(s):  
Zoran Ẑujović ◽  
Radivoje Srejić ◽  
Dušan Vučelić ◽  
Branimir Jovančićević ◽  
Dragomir Vitorović

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