The Minimal Spanning Tree Preservation Approaches for DNA Multiple Sequence Alignment and Evolutionary Tree Construction

Spanning Tree ◽

Evolutionary Tree ◽

Minimal Spanning Tree ◽

Multiple Sequence ◽

A Comprehensive Comparison of Guide Tree Construction for Multiple Sequence Alignment

International Journal of Advancements in Computing Technology ◽

10.4156/ijact.vol5.issue9.42 ◽

2013 ◽

Vol 5 (9) ◽

pp. 350-358

Author(s):

Liangliang Chen ◽

Yong Zeng ◽

Mingcheng Wu ◽

Guoli Ji

Keyword(s):

Sequence Alignment ◽

Multiple Sequence ◽

Guide Tree ◽

Tree Construction ◽

Comprehensive Comparison

Multiple Sequence Alignment and Phylogenetic Tree Construction of Viral Protein 2 of Bluetongue virus

International Journal of Bioinformatics and Biological Science ◽

10.30954/2319-5169.01.2018.6 ◽

2018 ◽

Vol 6 (1) ◽

Keyword(s):

Phylogenetic Tree ◽

Sequence Alignment ◽

Viral Protein ◽

Bluetongue Virus ◽

Multiple Sequence ◽

Implementing Hierarchical Clustering Method for Multiple Sequence Alignment and Phylogenetic Tree Construction

International Journal of Computer Science Engineering and Information Technology ◽

10.5121/ijcseit.2013.3101 ◽

2013 ◽

Vol 3 (1) ◽

pp. 1-12

Author(s):

Harmandeep Singh ◽

Er. Rajbir Singh ◽

Navjot Kaur

Keyword(s):

Phylogenetic Tree ◽

Hierarchical Clustering ◽

Sequence Alignment ◽

Clustering Method ◽

Multiple Sequence ◽

Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree

Combinatorial Pattern Matching - Lecture Notes in Computer Science ◽

10.1007/3-540-60044-2_52 ◽

1995 ◽

pp. 330-339 ◽

Cited By ~ 4

Author(s):

R. Ravi ◽

John D. Kececioglu

Keyword(s):

Approximation Algorithms ◽

Sequence Alignment ◽

Evolutionary Tree ◽

Multiple Sequence

MULTIPLE SEQUENCE ALIGNMENT BASED ON NEW APPROACHES OF TREE CONSTRUCTION AND SEQUENCE COMPARISON

Bioinformatics, Supercomputing and Complex Genome Analysis ◽

10.1142/9789814503655_0034 ◽

1993 ◽

Author(s):

Victor Solovyev ◽

Victor Streletc ◽

Luciano Milanesi

Keyword(s):

Sequence Alignment ◽

Sequence Comparison ◽

Multiple Sequence ◽

New Approaches ◽

A novel expert system for the prediction of accurate multiple sequence alignment and phylogenetic tree construction algorithms

2017 IEEE AFRICON ◽

10.1109/afrcon.2017.8095462 ◽

2017 ◽

Author(s):

Fanaja Harianja Randriamahenintsoa ◽

Toky Hajatiana Raboanary ◽

Heriniaina Andry Raboanary ◽

Julien Amedee Raboanary

Keyword(s):

Expert System ◽

Phylogenetic Tree ◽

Sequence Alignment ◽

Multiple Sequence ◽

Tree Construction ◽

Construction Algorithms

MAUSA: Using Simulated Annealing for Guide Tree Construction in Multiple Sequence Alignment

AI 2007: Advances in Artificial Intelligence - Lecture Notes in Computer Science ◽

10.1007/978-3-540-76928-6_61 ◽

2007 ◽

pp. 599-608

Author(s):

P. J. Uren ◽

R. M. Cameron-Jones ◽

A. H. J. Sale

Keyword(s):

Simulated Annealing ◽

Sequence Alignment ◽

Multiple Sequence ◽

Guide Tree ◽

Multiple sequence alignment using minimum spanning tree

2005 International Conference on Machine Learning and Cybernetics ◽

10.1109/icmlc.2005.1527521 ◽

2005 ◽

Cited By ~ 1

Author(s):

Mei-Jie Zhu ◽

Gui-Wu Hu ◽

Qi-Lun Zheng ◽

Hong Peng

Keyword(s):

Sequence Alignment ◽

Spanning Tree ◽

Minimum Spanning Tree ◽

Multiple Sequence

Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree

Discrete Applied Mathematics ◽

10.1016/s0166-218x(98)00079-1 ◽

1998 ◽

Vol 88 (1-3) ◽

pp. 355-366 ◽

Cited By ~ 6

Author(s):

R. Ravi ◽

John D. Kececioglu

Keyword(s):

Approximation Algorithms ◽

Sequence Alignment ◽

Evolutionary Tree ◽

Multiple Sequence

SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction

Nucleic Acids Research ◽

10.1093/nar/gkq298 ◽

2010 ◽

Vol 38 (Web Server) ◽

pp. W29-W34 ◽

Cited By ~ 18

Author(s):

R. Hagopian ◽

J. R. Davidson ◽

R. S. Datta ◽

B. Samad ◽

G. R. Jarvis ◽

...

Keyword(s):

Phylogenetic Tree ◽

Sequence Alignment ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

Tree Construction ◽