Non-linear vibrational modes in biomolecules: A periodic orbits description

2012 ◽  
Vol 399 ◽  
pp. 258-263 ◽  
Author(s):  
Alexandros Kampanarakis ◽  
Stavros C. Farantos ◽  
Vangelis Daskalakis ◽  
Constantinos Varotsis
2020 ◽  
Vol 62 (10) ◽  
pp. 1917-1925 ◽  
Author(s):  
O. V. Egorov ◽  
F. Mauguiere ◽  
VI. G. Tyuterev

2011 ◽  
Vol 134 (24) ◽  
pp. 244302 ◽  
Author(s):  
Frederic Mauguiere ◽  
Stavros C. Farantos ◽  
Jaime Suarez ◽  
Reinhard Schinke

1977 ◽  
Vol 45 ◽  
pp. 229-240
Author(s):  
G. Contopoulos

AbstractThe main steps of the non-linear theory of spiral structure are described. Near each of the main resonances the basic periodic orbits are calculated, and the sets of non-periodic orbits that follow them are found. A different integral of motion is applicable for each set, besides the Jacobi integral. Then the initial distribution function, f, is expressed as a function of the two integrals and the corresponding angles. The final distribution function is found by averaging over the angles:Then by integratingover all velocities we find the response density σresp. In order that σrespshould be equal to the imposed density, σimpwe must adjust the parameters of the imposed spiral field. The form of σrespaway from resonances can be derived explicitely for tight ana open spirals or bars; however near the resonances σrespcan be only calculated numerically. If the imposed field has almost constant amplitude, then the amplitude of the response is very large near the Inner Lindblad Resonance. In the case of a tight spiral the azimuth of the response density maximum with respect to the imposed density maximum tends to zero outside the ILR, while it tends to -90° inside the ILR. One possible self-consistent solution has zero amplitude inside the ILR both in the case of tight spirals and of bars. Finally an important quadrupole term was found near the ILR.


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