Local network component analysis for quantifying transcription factor activities

Methods ◽

10.1016/j.ymeth.2017.06.018 ◽

2017 ◽

Vol 124 ◽

pp. 25-35 ◽

Author(s):

Qianqian Shi ◽

Chuanchao Zhang ◽

Weifeng Guo ◽

Tao Zeng ◽

Lina Lu ◽

...

Keyword(s):

Transcription Factor ◽

Component Analysis ◽

Local Network ◽

Network Component Analysis ◽

Network Component

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ROBNCA: Robust Network Component Analysis for recovering transcription factor activities

2013 IEEE International Workshop on Genomic Signal Processing and Statistics ◽

10.1109/gensips.2013.6735919 ◽

2013 ◽

Author(s):

Amina Noor ◽

Aitzaz Ahmad ◽

Erchin Serpedin ◽

Mohamed Nounou ◽

Hazem Nounou

Keyword(s):

Transcription Factor ◽

Component Analysis ◽

Network Component Analysis ◽

Robust Network ◽

Network Component

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Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network

BMC Systems Biology ◽

10.1186/1752-0509-7-126 ◽

2013 ◽

Vol 7 (1) ◽

pp. 126 ◽

Author(s):

Ashish Misra ◽

Ganesh Sriram

Keyword(s):

Transcription Factor ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Component Analysis ◽

Network Component Analysis ◽

Transcription Factor Gene ◽

Factor Gene ◽

Gene Regulatory ◽

Network Component

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Transcription factor activity estimation based on particle swarm optimization and fast network component analysis

2010 Annual International Conference of the IEEE Engineering in Medicine and Biology ◽

10.1109/iembs.2010.5627641 ◽

2010 ◽

Author(s):

Wei Chen ◽

Chunqi Chang ◽

Y S Hung

Keyword(s):

Transcription Factor ◽

Particle Swarm Optimization ◽

Component Analysis ◽

Transcription Factor Activity ◽

Network Component Analysis ◽

Factor Activity ◽

Swarm Optimization ◽

Fast Network ◽

Activity Estimation ◽

Network Component

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A Closed-Form Solution for Transcription Factor Activity Estimation Using Network Component Analysis

Algorithms for Computational Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-319-07953-0_16 ◽

2014 ◽

pp. 196-207 ◽

Author(s):

Amina Noor ◽

Aitzaz Ahmad ◽

Bilal Wajid ◽

Erchin Serpedin ◽

Mohamed Nounou ◽

...

Keyword(s):

Transcription Factor ◽

Closed Form ◽

Closed Form Solution ◽

Component Analysis ◽

Form Solution ◽

Transcription Factor Activity ◽

Network Component Analysis ◽

Factor Activity ◽

Activity Estimation ◽

Network Component

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SparseNCA: Sparse Network Component Analysis for Recovering Transcription Factor Activities with Incomplete Prior Information

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2015.2495224 ◽

2018 ◽

Vol 15 (2) ◽

pp. 387-395 ◽

Author(s):

Amina Noor ◽

Aitzaz Ahmad ◽

Erchin Serpedin

Keyword(s):

Transcription Factor ◽

Prior Information ◽

Component Analysis ◽

Network Component Analysis ◽

Sparse Network ◽

Network Component ◽

Incomplete Prior Information

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ROBNCA: robust network component analysis for recovering transcription factor activities

Bioinformatics ◽

10.1093/bioinformatics/btt433 ◽

2013 ◽

Vol 29 (19) ◽

pp. 2410-2418 ◽

Author(s):

Amina Noor ◽

Aitzaz Ahmad ◽

Erchin Serpedin ◽

Mohamed Nounou ◽

Hazem Nounou

Keyword(s):

Transcription Factor ◽

Component Analysis ◽

Network Component Analysis ◽

Robust Network ◽

Network Component

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Fast Network Component Analysis for Gene Regulation Networks

2007 IEEE Workshop on Machine Learning for Signal Processing ◽

10.1109/mlsp.2007.4414276 ◽

2007 ◽

Author(s):

Chunqi Chang ◽

Zhi Ding ◽

Yeung Sam Hung ◽

Peter C.W. Fung

Keyword(s):

Gene Regulation ◽

Component Analysis ◽

Network Component Analysis ◽

Gene Regulation Networks ◽

Fast Network ◽

Network Component

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PFastNCA: Parallel Fast Network Component Analysis for Gene Regulatory Network

The International Conference on Advanced Machine Learning Technologies and Applications (AMLTA2018) - Advances in Intelligent Systems and Computing ◽

10.1007/978-3-319-74690-6_57 ◽

2018 ◽

pp. 585-594 ◽

Author(s):

Dina Elsayad ◽

A. Ali ◽

Howida A. Shedeed ◽

M. F. Tolba

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Component Analysis ◽

Network Component Analysis ◽

Fast Network ◽

Gene Regulatory ◽

Network Component

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Nonnegative Network Component Analysis by Linear Programming for Gene Regulatory Network Reconstruction

Independent Component Analysis and Signal Separation - Lecture Notes in Computer Science ◽

10.1007/978-3-642-00599-2_50 ◽

2009 ◽

pp. 395-402 ◽

Author(s):

Chunqi Chang ◽

Zhi Ding ◽

Yeung Sam Hung

Keyword(s):

Linear Programming ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Component Analysis ◽

Network Reconstruction ◽

Network Component Analysis ◽

Gene Regulatory ◽

Network Component

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Transcriptome network component analysis with limited microarray data

Bioinformatics ◽

10.1093/bioinformatics/btl279 ◽

2006 ◽

Vol 22 (15) ◽

pp. 1886-1894 ◽

Author(s):

S. J. Galbraith ◽

L. M. Tran ◽

J. C. Liao

Keyword(s):

Microarray Data ◽

Component Analysis ◽

Network Component Analysis ◽

Network Component

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