A two-dimensional replica-exchange molecular dynamics method for simulating RNA folding using sparse experimental restraints

Methods ◽  
2019 ◽  
Vol 162-163 ◽  
pp. 96-107 ◽  
Author(s):  
Parisa Ebrahimi ◽  
Simi Kaur ◽  
Lorenzo Baronti ◽  
Katja Petzold ◽  
Alan A. Chen
Keyword(s):  
Molecular Dynamics ◽  
Rna Folding ◽  
Molecular Dynamics Method ◽  
Replica Exchange ◽  
Two Dimensional ◽  
Replica Exchange Molecular Dynamics ◽  
Dynamics Method

Implementation of the replica-exchange molecular dynamics method for rigid bodies

2006 ◽  
Vol 106 (10) ◽  
pp. 2208-2213 ◽  
Author(s):  
A. A. Moskovsky ◽  
V. V. Vanovschi ◽  
S. S. Konyukhov ◽  
A. V. Nemukhin
Keyword(s):  
Molecular Dynamics ◽  
Rigid Bodies ◽  
Molecular Dynamics Method ◽  
Replica Exchange ◽  
Replica Exchange Molecular Dynamics ◽  
Dynamics Method
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