Protein secondary structure prediction based on the GOR algorithm incorporating multiple sequence alignment information

Polymer ◽

10.1016/s0032-3861(01)00425-6 ◽

2002 ◽

Vol 43 (2) ◽

pp. 441-449 ◽

Author(s):

A. Kloczkowski ◽

K.-L. Ting ◽

R.L. Jernigan ◽

J. Garnier

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Multiple Sequence

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Integrating Protein Secondary Structure Prediction and Multiple Sequence Alignment

Current Protein and Peptide Science ◽

10.2174/1389203043379675 ◽

2004 ◽

Vol 5 (4) ◽

pp. 249-266 ◽

Author(s):

V. Simossis ◽

J. Heringa

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Multiple Sequence

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Application of multiple sequence alignment profiles to improve protein secondary structure prediction

Proteins Structure Function and Bioinformatics ◽

10.1002/1097-0134(20000815)40:3<502::aid-prot170>3.0.co;2-q ◽

2000 ◽

Vol 40 (3) ◽

pp. 502-511 ◽

Author(s):

James A. Cuff ◽

Geoffrey J. Barton

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Multiple Sequence

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The Limits of Protein Secondary Structure Prediction Accuracy from Multiple Sequence Alignment

Journal of Molecular Biology ◽

10.1006/jmbi.1993.1649 ◽

1993 ◽

Vol 234 (4) ◽

pp. 951-957 ◽

Author(s):

Robert B. Russell ◽

Geoffrey J. Barton

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Prediction Accuracy ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Multiple Sequence

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Computational Methods for Protein Secondary Structure Prediction Using Multiple Sequence Alignments

Current Protein and Peptide Science ◽

10.2174/1389203003381324 ◽

2000 ◽

Vol 1 (3) ◽

pp. 273-301 ◽

Author(s):

Jaap Heringa

Keyword(s):

Secondary Structure ◽

Computational Methods ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Sequence Alignments ◽

Multiple Sequence ◽

Multiple Sequence Alignments

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Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction

Advances in Bioinformatics and Computational Biology - Lecture Notes in Computer Science ◽

10.1007/11532323_14 ◽

2005 ◽

pp. 128-140

Author(s):

Georgios Joannis Pappas ◽

Shankar Subramaniam

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Sequence Alignments ◽

Multiple Sequence ◽

Multiple Sequence Alignments

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Evaluation and improvement of multiple sequence methods for protein secondary structure prediction

Proteins Structure Function and Bioinformatics ◽

10.1002/(sici)1097-0134(19990301)34:4<508::aid-prot10>3.0.co;2-4 ◽

1999 ◽

Vol 34 (4) ◽

pp. 508-519 ◽

Author(s):

James A. Cuff ◽

Geoffrey J. Barton

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction ◽

Multiple Sequence

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A Novel Comparative Sequence Analysis Method for ncRNA Secondary Structure Prediction without Multiple Sequence Alignment

2008 Fourth International Conference on Natural Computation ◽

10.1109/icnc.2008.446 ◽

2008 ◽

Author(s):

Quan Zou ◽

Mao-Zu Guo ◽

Yang Liu ◽

Zhi-An Xing

Keyword(s):

Sequence Analysis ◽

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Comparative Sequence Analysis ◽

Analysis Method ◽

Multiple Sequence ◽

Comparative Sequence

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Protein Multiple Sequence Alignment Benchmarking through Secondary Structure Prediction

Bioinformatics ◽

10.1093/bioinformatics/btw840 ◽

2017 ◽

pp. btw840 ◽

Author(s):

Quan Le ◽

Fabian Sievers ◽

Desmond G. Higgins

Keyword(s):

Secondary Structure ◽

Sequence Alignment ◽

Multiple Sequence Alignment ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Multiple Sequence ◽

Protein Multiple Sequence Alignment

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Faculty Opinions recommendation of Protein secondary structure prediction using deep convolutional neural fields.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.726067888.793548469 ◽

2018 ◽

Author(s):

Patrice Koehl

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Neural Fields ◽

Protein Secondary Structure Prediction

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Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

Protein Science ◽

10.1002/pro.5560051116 ◽

1996 ◽

Vol 5 (11) ◽

pp. 2298-2310 ◽

Author(s):

Ross D. King ◽

Michael J.E. Sternberg

Keyword(s):

Secondary Structure ◽

Structure Prediction ◽

Secondary Structure Prediction ◽

Protein Secondary Structure ◽

Protein Secondary Structure Prediction

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