Molecular cloning and characterization of four scorpion K+-toxin-like peptides: A new subfamily of venom peptides (α-KTx14) and genomic analysis of a member***The nucleotide sequence data reported in this paper have been submitted to the EMBL Nucleotide Sequence Database under the accession numbers: AJ277726 (BmKK1); AJ277727 (BmKK2); AJ277728 (BmKK3); AJ277729 (BmKK4); and AJ277730 (genomic sequence of BmKK2).

Biochimie ◽  
2001 ◽  
Vol 83 (9) ◽  
pp. 883-889 ◽  
Author(s):  
Xian-Chun Zeng ◽  
Fang Peng ◽  
Feng Luo ◽  
Shun-Yi Zhu ◽  
Hui Liu ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Molecular Cloning ◽  
Genomic Sequence ◽  
Sequence Data ◽  
Genomic Analysis ◽  
Sequence Database ◽  
Nucleotide Sequence Data ◽  
Embl Nucleotide Sequence Database ◽  
Nucleotide Sequence Database

scholarly journals The international nucleotide sequence database collaboration

2020 ◽  
Vol 49 (D1) ◽  
pp. D121-D124
Author(s):  
Masanori Arita ◽  
Ilene Karsch-Mizrachi ◽  
Guy Cochrane
Keyword(s):  
Nucleotide Sequence ◽  
Sequence Data ◽  
Data Bank ◽  
National Institutes Of Health ◽  
Sequence Database ◽  
National Library ◽  
Nucleotide Sequence Data ◽  
International Nucleotide Sequence Database ◽  
European Nucleotide Archive ◽  
Nucleotide Sequence Database

Abstract The International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc.org/) has been the core infrastructure for collecting and providing nucleotide sequence data and metadata for >30 years. Three partner organizations, the DNA Data Bank of Japan (DDBJ) at the National Institute of Genetics in Mishima, Japan; the European Nucleotide Archive (ENA) at the European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) in Hinxton, UK; and GenBank at National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health in Bethesda, Maryland, USA have been collaboratively maintaining the INSDC for the benefit of not only science but all types of community worldwide.

scholarly journals DDBJ Database updates and computational infrastructure enhancement

2019 ◽  
Author(s):  
Osamu Ogasawara ◽  
Yuichi Kodama ◽  
Jun Mashima ◽  
Takehide Kosuge ◽  
Takatomo Fujisawa
Keyword(s):  
Nucleotide Sequence ◽  
Graphics Processing Units ◽  
Large Scale ◽  
Sequence Data ◽  
Sequence Database ◽  
Cloud Infrastructure ◽  
File Transfer ◽  
Nucleotide Sequence Data ◽  
Starting Point ◽  
Nucleotide Sequence Database

Abstract The Bioinformation and DDBJ Center (https://www.ddbj.nig.ac.jp) in the National Institute of Genetics (NIG) maintains a primary nucleotide sequence database as a member of the International Nucleotide Sequence Database Collaboration (INSDC) in partnership with the US National Center for Biotechnology Information and the European Bioinformatics Institute. The NIG operates the NIG supercomputer as a computational basis for the construction of DDBJ databases and as a large-scale computational resource for Japanese biologists and medical researchers. In order to accommodate the rapidly growing amount of deoxyribonucleic acid (DNA) nucleotide sequence data, NIG replaced its supercomputer system, which is designed for big data analysis of genome data, in early 2019. The new system is equipped with 30 PB of DNA data archiving storage; large-scale parallel distributed file systems (13.8 PB in total) and 1.1 PFLOPS computation nodes and graphics processing units (GPUs). Moreover, as a starting point of developing multi-cloud infrastructure of bioinformatics, we have also installed an automatic file transfer system that allows users to prevent data lock-in and to achieve cost/performance balance by exploiting the most suitable environment from among the supercomputer and public clouds for different workloads.

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