Molecular phylogeny of Pemphiginae (Hemiptera: Aphididae) inferred from nuclear gene EF-1α sequences

2008 ◽  
Vol 98 (5) ◽  
pp. 499-507 ◽  
Author(s):  
H.C. Zhang ◽  
G.X. Qiao

AbstractThree traditional tribes of Fordini, Pemphigini and Eriosomatini comprise Pemphiginae, and there are two subtribes in Fordini and Pemphigini, respectively. Most of the species in this subfamily live heteroecious holocyclic lives with distinct primary host specificity. The three tribes of Pemphigini (except Prociphilina), Eriosomatini and Fordini use three families of plants, Salicaceae (Populus), Ulmaceae (Ulums) and Anacardiaceae (Pistacia and Rhus), as primary hosts, respectively, and form galls on them. Therefore, the Pemphigids are well known as gall makers, and their galls can be divided into true galls and pseudo-galls in type. We performed the first molecular phylogenetic study of Pemphiginae based on molecular data (EF-1α sequences). Results show that Pemphiginae is probably not a monophylum, but the monophyly of Fordini is supported robustly. The monophyly of Pemphigini is not supported, and two subtribes in it, Pemphigina and Prociphilina, are suggested to be raised to tribal level, equal with Fordini and Eriosomatini. The molecular phylogenetic analysis does not show definite relationships among the four tribes of Pemphiginae, as in the previous phylogenetic study based on morphology. It seems that the four tribes radiated at nearly the same time and then evolved independently. Based on this, we can speculate that galls originated independently four times in the four tribes, and there is no evidence to support that true galls are preceded by pseudo-galls, as in the case of thrips and willow sawflies.

Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 254 ◽  
Author(s):  
Sung Kyung Han ◽  
Tae Hoon Kim ◽  
Jung Sung Kim

It is very important to confirm and understand the genetic background of cultivated plants used in multiple applications. The genetic background is the history of crossing between maternal and paternal plants to generate a cultivated plant. If the plant in question was generated from a simple origin and not complicated crossing, we can easily confirm the history using a phylogenetic tree based on molecular data. This study was conducted to trace the origin of “Tottori Fujita 1gou” and “Tottori Fujita 2gou”, which are registered as cultivars originating from Phedimus kamtschaticus. To investigate the phylogenetic position of these cultivars, the backbone tree of the genus Phedimus needed to be further constructed because it retains inarticulate phylogenetic relationships among the wild species. We performed molecular phylogenetic analysis for P. kamtschaticus, Phedimus takesimensis, Phedimus aizoon, and Phedimus middendorffianus, which are assumed as the species of origin for “Tottori Fujita 1gou” and “Tottori Fujita 2gou”. The molecular phylogenetic tree based on the internal transcribed spacer (ITS) and psbA-trnH sequences showed the monophyly of the genus Phedimus, with P. takesimensis forming a single clade. However, P. kamtschaticus and P. aizoon were scattered in the tree. It was verified that “Tottori Fujita 1gou” and “Tottori Fujita 2gou” were embedded in a clade with P. takesimensis and not P. kamtschaticus. Therefore, origination from P. takesimensis was strongly supported. Based on these results, molecular phylogenetic analysis is suggested as a powerful tool for clearly tracing the origin of cultivated plants.


Paleobiology ◽  
1994 ◽  
Vol 20 (3) ◽  
pp. 259-273 ◽  
Author(s):  
Andrew B. Smith ◽  
D. T. J. Littlewood

Molecular data are becoming an indispensable tool for the reconstruction of phylogenies. Fossil molecular data remain scarce, but have the potential to resolve patterns of deep branching and provide empirical tests of tree reconstruction techniques. A total evidence approach, combining and comparing complementary morphological, molecular and stratigraphical data from both recent and fossil taxa, is advocated as the most promising way forward because there are several well-established problems that can afflict the analysis of molecular sequence data sometimes resulting in spurious tree topologies. The integration of evidence allows us to: (1) choose suitable taxa for molecular phylogenetic analysis for the question at hand; (2) discriminate between conflicting hypotheses of taxonomic relationship and phylogeny; (3) evaluate procedures and assumptions underlying methods of building trees; and (4) estimate rates of molecular evolution in the geological past. Paleontology offers a set of independent data for comparison and corroboration of analyses and provides the only direct means of calibrating molecular trees, thus giving insight into rates of molecular evolution in the geological past.


2005 ◽  
Vol 83 (11) ◽  
pp. 1457-1477 ◽  
Author(s):  
Sigisfredo Garnica ◽  
Michael Weiß ◽  
Bernhard Oertel ◽  
Franz Oberwinkler

Phylogenetic relationships in the genus Cortinarius with emphasis on European species were studied by integrating a molecular phylogenetic analysis of nuclear rDNA sequences with morphological, chemical, and ecological data. Internal transcribed spacers (ITS1 and ITS2, including 5.8S) and the D1–D2 regions of nuclear rDNA of 262 Cortinarius species including most of the recognised subgenera from Europe, South America, Australia, Tasmania, New Zealand, and Asia were sequenced and analysed by maximum likelihood and neighbour joining. Our morphological and molecular analyses showed considerable disagreement with earlier morphology-based hypotheses concerning the infrageneric delimitations in Cortinarius. We propose a new base for a more natural classification system in Cortinarius involving the taxonomic rearrangement of the species into the following major lineages that we informally designate as “clades” at this time: (1) phlegmacioid species are included in Alluti, Amarescentes, Arguti, Calochroi, Caerulescentes, Percomes, Phlegmacioides, Phlegmacium, Purpurascentes, Scauri, and Vulpini; (2) the Heterocliti clade includes species of the subgenera Leprocybe and Cystogenes ; (3) most of the Myxacium species are included in the Delibuti and Myxacium clades; (4) part of Rozites are included in the Rozites clade; (5) the north-hemispheric species of subgenus Dermocybe are included in the Dermocybe clade and part of the south-hemispheric species in the Splendidi clade; (6) part of Sericeocybe are integrated in the Anomali and Telamonia clades; (7) members of subgenus Cortinarius are assigned to the Cortinarius clade; (8) telamonioid taxa are included in the Obtusi, Renidentes, and Telamonia clades. Several Cortinarius species with peculiar patterns of morphology and basidiome coloration had isolated positions in the sequence analysis, and the evolutionary relationships among the major lineages remained unresolved. Our results suggest the convergent evolution of certain morphological traits across phylogenetically divergent lineages in Cortinarius. However, combinations of features such as pileipellis anatomy, spore shape, veil coloration, basidiome pigments, and stipe shape appear useful to circumscribe clades. Our molecular phylogenetic analysis allows insights in global geographical patterns of species distribution within the major lineages in the genus Cortinarius. The clade structure proposed here could be used as backbone for further more detailed systematic studies.


PhytoKeys ◽  
2020 ◽  
Vol 165 ◽  
pp. 85-98
Author(s):  
Neng Wei ◽  
Zhi-Xiang Zhong ◽  
David Kimutai Melly ◽  
Solomon Kipkoech ◽  
Benjamin Muema Watuma ◽  
...  

Zehneria grandibracteata, a new species of Cucurbitaceae from western Kenya, is described here, based on morphological and molecular data. It has long been misidentified as the widely-distributed species Z. scabra. However, it differs by its ovate leafy probract at the base of the inflorescences, subglabrous condition of the entire plant, shorter receptacle-tube and filaments, as well as denser and sessile inflorescences. Furthermore, the molecular phylogenetic analysis of Zehneria, based on nrITS sequences, further supports the argument that Z. grandibracteata should be segregated from Z. scabra.


ZooKeys ◽  
2018 ◽  
Vol 808 ◽  
pp. 123-160 ◽  
Author(s):  
Ayman Khamis Elsayed ◽  
Junichi Yukawa ◽  
Makoto Tokuda

The genus Asteralobia (Diptera, Cecidomyiidae, Asphondyliini, Schizomyiina) was erected by Kovalev (1964) based on the presence of constrictions on the cylindrical male flagellomeres. In the present study, we examine the morphological features of Asteralobia and Schizomyia and found that the male flagellomeres are constricted also in Schizomyiagaliorum, the type species of Schizomyia. Because no further characters clearly separating Asteralobia from Schizomyia were observed, we synonymize Asteralobia under Schizomyia. Molecular phylogenetic analysis strongly supports our taxonomic treatment. We describe five new species of Schizomyia from Japan, S.achyranthesae Elsayed & Tokuda, sp. n., S.diplocyclosae Elsayed & Tokuda, sp. n., S.castanopsisae Elsayed & Tokuda, sp. n., S.usubai Elsayed & Tokuda, sp. n., and S.paederiae Elsayed & Tokuda, sp. n., and redescribe three species, S.galiorum Kieffer, S.patriniae Shinji, and S.asteris Kovalev. A taxonomic key to the Japanese Schizomyia species is provided.


Phytotaxa ◽  
2020 ◽  
Vol 442 (3) ◽  
pp. 196-204 ◽  
Author(s):  
YAN-FENG SONG ◽  
MENG LI ◽  
BO XU ◽  
SHUI-FEI CHEN ◽  
LIN CHEN ◽  
...  

Stellaria multipartita sp. nov. (Caryophyllaceae) from Chongqing, China, is described and illustrated based on morphological and molecular data. The new species is similar to S. radians by the palmately fimbriate petals with more linear divisions. Different characters are: shape of the leaves (oblong-triangular to ovate-triangular vs. oblong-lanceolate to ovate-lanceolate in S. radians), petals (10–12-cleft vs. 5–7-cleft in S. radians), and seeds (with mamillate ornamentation vs. scrobiculate ornamentation in S. radians). A molecular phylogenetic analysis supports the recognition of Chongqing population as a new species for science.


Phytotaxa ◽  
2015 ◽  
Vol 234 (2) ◽  
pp. 151
Author(s):  
Edward Schilling ◽  
RANDALL W. SCOTT ◽  
JOSE L. PANERO

A recent molecular phylogenetic study of the predominantly Mexican Brickellia resolved issues regarding its generic circumscription, but a new infrageneric classification remains to be formalized.  We propose to recognize as sections nine clades identified as monophyletic based on molecular data.  Three of these clades have been previously recognized as distinct genera, Barroetea, Kuhnia, and Phanerostylis, and require names at the sectional level.  The remaining six sections have names available from previous taxonomic work, but two of them require validation at the sectional level, and all have a different species composition compared to previous studies.


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