scholarly journals Molecule-Centered Method for Accelerating the Calculation of Hydrodynamic Interactions in Brownian Dynamics Simulations Containing Many Flexible Biomolecules

2013 ◽  
Vol 9 (7) ◽  
pp. 3224-3239 ◽  
Author(s):  
Adrian H. Elcock
Keyword(s):  
Brownian Dynamics ◽  
Hydrodynamic Interactions ◽  
Dynamics Simulations ◽  
Brownian Dynamics Simulations

An iterative method for hydrodynamic interactions in Brownian dynamics simulations of polymer dynamics

2017 ◽  
Vol 147 (2) ◽  
pp. 024904 ◽  
Author(s):  
Linling Miao ◽  
Charles D. Young ◽  
Charles E. Sing
Keyword(s):  
Iterative Method ◽  
Brownian Dynamics ◽  
Hydrodynamic Interactions ◽  
Polymer Dynamics ◽  
Dynamics Simulations ◽  
Brownian Dynamics Simulations

scholarly journals Krylov subspace methods for computing hydrodynamic interactions in Brownian dynamics simulations

2012 ◽  
Vol 137 (6) ◽  
pp. 064106 ◽  
Author(s):  
Tadashi Ando ◽  
Edmond Chow ◽  
Yousef Saad ◽  
Jeffrey Skolnick
Keyword(s):  
Brownian Dynamics ◽  
Krylov Subspace ◽  
Krylov Subspace Methods ◽  
Hydrodynamic Interactions ◽  
Subspace Methods ◽  
Dynamics Simulations ◽  
Brownian Dynamics Simulations

scholarly journals Thermally Fluctuating, Semiflexible Sheets in Simple Shear Flow

Soft Matter ◽  
2022 ◽  
Author(s):  
Kevin S. Silmore ◽  
Michael Strano ◽  
James W. Swan
Keyword(s):  
Shear Flow ◽  
Simple Shear ◽  
Brownian Dynamics ◽  
Thermal Fluctuations ◽  
Hydrodynamic Interactions ◽  
Simple Shear Flow ◽  
Bending Rigidity ◽  
Dynamics Simulations ◽  
Brownian Dynamics Simulations ◽  
Shear Energy

We perform Brownian dynamics simulations of semiflexible colloidal sheets with hydrodynamic interactions and thermal fluctuations in shear flow. As a function of the ratio of bending rigidity to shear energy...

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