scholarly journals Analysis of adaptive walks on NK fitness landscapes with different interaction schemes

2015 ◽  
Vol 2015 (6) ◽  
pp. P06014 ◽  
Author(s):  
Stefan Nowak ◽  
Joachim Krug
1999 ◽  
Vol 60 (2) ◽  
pp. 2154-2159 ◽  
Author(s):  
Claus O. Wilke ◽  
Thomas Martinetz

2018 ◽  
Author(s):  
Atish Agarwala ◽  
Daniel S. Fisher

AbstractThe dynamics of evolution is intimately shaped by epistasis — interactions between genetic elements which cause the fitness-effect of combinations of mutations to be non-additive. Analyzing evolutionary dynamics that involves large numbers of epistatic mutations is intrinsically difficult. A crucial feature is that the fitness landscape in the vicinity of the current genome depends on the evolutionary history. A key step is thus developing models that enable study of the effects of past evolution on future evolution. In this work, we introduce a broad class of high-dimensional random fitness landscapes for which the correlations between fitnesses of genomes are a general function of genetic distance. Their Gaussian character allows for tractable computational as well as analytic understanding. We study the properties of these landscapes focusing on the simplest evolutionary process: random adaptive (uphill) walks. Conventional measures of “ruggedness” are shown to not much affect such adaptive walks. Instead, the long-distance statistics of epistasis cause all properties to be highly conditional on past evolution, determining the statistics of the local landscape (the distribution of fitness-effects of available mutations and combinations of these), as well as the global geometry of evolutionary trajectories. In order to further explore the effects of conditioning on past evolution, we model the effects of slowly changing environments. At long times, such fitness “seascapes” cause a statistical steady state with highly intermittent evolutionary dynamics: populations undergo bursts of rapid adaptation, interspersed with periods in which adaptive mutations are rare and the population waits for more new directions to be opened up by changes in the environment. Finally, we discuss prospects for studying more complex evolutionary dynamics and on broader classes of high-dimensional landscapes and seascapes.


2021 ◽  
Vol 288 (1953) ◽  
pp. 20210940
Author(s):  
Nathan G. Walworth ◽  
Jana Hinners ◽  
Phoebe A. Argyle ◽  
Suzana G. Leles ◽  
Martina A. Doblin ◽  
...  

Microbes form the base of food webs and drive biogeochemical cycling. Predicting the effects of microbial evolution on global elemental cycles remains a significant challenge due to the sheer number of interacting environmental and trait combinations. Here, we present an approach for integrating multivariate trait data into a predictive model of trait evolution. We investigated the outcome of thousands of possible adaptive walks parameterized using empirical evolution data from the alga Chlamydomonas exposed to high CO 2 . We found that the direction of historical bias (existing trait correlations) influenced both the rate of adaptation and the evolved phenotypes (trait combinations). Critically, we use fitness landscapes derived directly from empirical trait values to capture known evolutionary phenomena. This work demonstrates that ecological models need to represent both changes in traits and changes in the correlation between traits in order to accurately capture phytoplankton evolution and predict future shifts in elemental cycling.


2018 ◽  
Vol 172 (1) ◽  
pp. 226-278 ◽  
Author(s):  
Sungmin Hwang ◽  
Benjamin Schmiegelt ◽  
Luca Ferretti ◽  
Joachim Krug

2012 ◽  
Vol 2012 (02) ◽  
pp. P02014 ◽  
Author(s):  
J A de Lima Filho ◽  
F G B Moreira ◽  
P R A Campos ◽  
Viviane M de Oliveira

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