Pro54DB: a database for experimentally verified sigma-54 promoters

Bioinformatics ◽

10.1093/bioinformatics/btw630 ◽

2016 ◽

pp. btw630 ◽

Author(s):

Zhi-Yong Liang ◽

Hong-Yan Lai ◽

Huan Yang ◽

Chang-Jian Zhang ◽

Hui Yang ◽

...

Keyword(s):

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Functional roles for the glutamines within the glutamine-rich region of the transcription factor sigma 54.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(17)42359-3 ◽

1994 ◽

Vol 269 (1) ◽

pp. 373-378

Author(s):

M. Hsieh ◽

Y. Tintut ◽

J.D. Gralla

Keyword(s):

Transcription Factor ◽

Rich Region ◽

Functional Roles ◽

Sigma 54 ◽

Glutamine Rich Region

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A light-repressed transcript found in Synechococcus PCC 7002 is similar to a chloroplast-specific small subunit ribosomal protein and to a transcription modulator protein associated with sigma 54.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(17)31907-5 ◽

1994 ◽

Vol 269 (33) ◽

pp. 20905-20912

Author(s):

X. Tan ◽

M. Varughese ◽

W.R. Widger

Keyword(s):

Ribosomal Protein ◽

Small Subunit ◽

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Geometry of the process of transcription activation at the sigma 54-dependent nifH promoter of Klebsiella pneumoniae.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(18)47266-3 ◽

1994 ◽

Vol 269 (41) ◽

pp. 25419-25425

Author(s):

J A Molina-López ◽

F Govantes ◽

E Santero

Keyword(s):

Klebsiella Pneumoniae ◽

Transcription Activation ◽

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Identification of a DNA-contacting surface in the transcription factor sigma-54

Molecular Microbiology ◽

10.1111/j.1365-2958.1994.tb00303.x ◽

1994 ◽

Vol 11 (2) ◽

pp. 227-236 ◽

Author(s):

W. Cannon ◽

F. Claverie-Martin ◽

S. Austin ◽

M. Buck

Keyword(s):

Transcription Factor ◽

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Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism.

Microbiological Reviews ◽

10.1128/mr.53.3.367-376.1989 ◽

1989 ◽

Vol 53 (3) ◽

pp. 367-376 ◽

Author(s):

S Kustu ◽

E Santero ◽

J Keener ◽

D Popham ◽

D Weiss

Keyword(s):

Common Mechanism ◽

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A sigma 54 promoter and downstream sequence elements ftr2 and ftr3 are required for regulated expression of divergent transcription units flaN and flbG in Caulobacter crescentus.

Journal of Bacteriology ◽

10.1128/jb.175.7.2067-2076.1993 ◽

1993 ◽

Vol 175 (7) ◽

pp. 2067-2076 ◽

Author(s):

D A Mullin ◽

A Newton

Keyword(s):

Caulobacter Crescentus ◽

Sigma 54 ◽

Regulated Expression ◽

Sequence Elements ◽

Divergent Transcription

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PCR mutagenesis identifies a polymerase-binding sequence of sigma 54 that includes a sigma 70 homology region.

Journal of Bacteriology ◽

10.1128/jb.177.20.5818-5825.1995 ◽

1995 ◽

Vol 177 (20) ◽

pp. 5818-5825 ◽

Author(s):

Y Tintut ◽

J D Gralla

Keyword(s):

Sigma 54 ◽

Homology Region ◽

Polymerase Binding ◽

Sigma 70 ◽

Binding Sequence

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Growth phase-dependent transcription of the sigma(54)-dependent Po promoter controlling the Pseudomonas-derived (methyl)phenol dmp operon of pVI150.

Journal of Bacteriology ◽

10.1128/jb.178.13.3727-3735.1996 ◽

1996 ◽

Vol 178 (13) ◽

pp. 3727-3735 ◽

Author(s):

C C Sze ◽

T Moore ◽

V Shingler

Keyword(s):

Growth Phase ◽

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Regulatory sequences in sigma 54 localise near the start of DNA melting

Journal of Molecular Biology ◽

10.1006/jmbi.2000.4393 ◽

2001 ◽

Vol 306 (4) ◽

pp. 681-701 ◽

Author(s):

Siva R Wigneshweraraj ◽

Matthew K Chaney ◽

Akira Ishihama ◽

Martin Buck

Keyword(s):

Dna Melting ◽

Regulatory Sequences ◽

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Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action

Genes & Development ◽

10.1101/gad.205501 ◽

2001 ◽

Vol 15 (17) ◽

pp. 2282-2294 ◽

Author(s):

M. Chaney

Keyword(s):

Transition State ◽

Aluminum Fluoride ◽

Transcriptional Activators ◽

Transition State Analog ◽

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