scholarly journals Sequence-dependent conformational perturbation in DNA duplexes containing an ϵA•T mismatch using molecular dynamics simulation

2000 ◽  
Vol 21 (9) ◽  
pp. 1727-1736 ◽  
Author(s):  
Anton B. Guliaev ◽  
János Sági ◽  
B. Singer
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Dynamics Simulation ◽  
Dna Duplexes ◽  
Sequence Dependent

Conformational and energetic properties of pyrrolidinyl PNA-DNA duplexes: A molecular dynamics simulation

2017 ◽  
Vol 1122 ◽  
pp. 27-33 ◽  
Author(s):  
Nattawee Poomsuk ◽  
Tawun Remsungnen ◽  
Tirayut Vilaivan ◽  
Andrew J. Hunt ◽  
Khatcharin Siriwong
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Dynamics Simulation ◽  
Dna Duplexes ◽  
Energetic Properties

Hole-transfer Mechanism in Hydrated DNA Duplexes: Direct Ab Initio Molecular Dynamics Simulation

2019 ◽  
Vol 16 (24) ◽  
pp. 53-64
Author(s):  
Hajime Wakabayashi ◽  
Yasuyuki Ishikawa ◽  
Takayuki Tsukamoto ◽  
Noriyuki Kurita
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Ab Initio ◽  
Transfer Mechanism ◽  
Dynamics Simulation ◽  
Ab Initio Molecular Dynamics ◽  
Dna Duplexes ◽  
Hole Transfer

scholarly journals 2P134 Analysis of sequence-dependent properties of DNA by molecular dynamics simulation

2005 ◽  
Vol 45 (supplement) ◽  
pp. S153
Author(s):  
S. Fujii ◽  
S. Takenaka ◽  
H. Kono ◽  
N. Go ◽  
A. Aarai
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Dynamics Simulation ◽  
Sequence Dependent

scholarly journals 139 Analysis of structure and thermodynamics of modified DNA duplexes using molecular dynamics simulation

2015 ◽  
Vol 33 (sup1) ◽  
pp. 90-91 ◽  
Author(s):  
Alexander A. Lomzov ◽  
Vitaly V. Gorelov ◽  
Victor M. Golyshev ◽  
Tatiana V. Abramova ◽  
Dmitrii V. Pyshnyi
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulation ◽  
Dynamics Simulation ◽  
Dna Duplexes ◽  
Modified Dna
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