Modern mineral processing plants utilise fault detection and diagnosis to minimise time spent under faulty conditions. However, a fault originating in one plant section (PS) can propagate throughout the entire plant, obscuring its root cause. Causality analysis identifies the cause–effect relationships between process variables and presents them in a causality map to inform root cause identification. This paper presents a novel hierarchical approach for plant-wide causality analysis that decreases the number of nodes in a causality map, improving interpretability and enabling causality analysis as a tool for plant-wide fault diagnosis. Two causality maps are constructed in subsequent stages: first, a dimensionally reduced, plant-wide causality map used to localise the fault to a PS; second, a causality map of the identified PS used to identify the root cause. The hierarchical approach accurately identified the true root cause in a well-understood case study; its plant-wide map consisted of only three nodes compared to 15 nodes in the standard causality map and its transitive reduction. The plant-wide map required less fault-state data, time series in the order of hours or days instead of weeks or months, further motivating its application in rapid root cause analysis.