Semi-supervised learning protein complexes from protein interaction networks

2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2010.5706571 ◽

2010 ◽

Author(s):

Lei Shi ◽

Aidong Zhang

Keyword(s):

Supervised Learning ◽

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks

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Predicting protein complexes in protein interaction networks: A supervised learning based method

2013 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2013.6732485 ◽

2013 ◽

Author(s):

Fengying Yu ◽

Zhihao Yang ◽

Nan Tang ◽

Jiajin Wu ◽

Hongfei Lin ◽

...

Keyword(s):

Supervised Learning ◽

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks

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From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2014.2306825 ◽

2014 ◽

Vol 11 (4) ◽

pp. 616-627 ◽

Author(s):

Bin Xu ◽

Jihong Guan

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

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Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis

2013 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2013.6732716 ◽

2013 ◽

Author(s):

Haiying Wang ◽

Huiru Zheng ◽

Francisco Azuaje

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Homogeneity Analysis ◽

Functional Homogeneity

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Identifying Protein Complexes from Protein-protein Interaction Networks Based on Fuzzy Clustering and GO Semantic Information

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2021.3095947 ◽

2021 ◽

pp. 1-1

Author(s):

Xiangyu Pan ◽

Lun Hu ◽

Pengwei Hu ◽

Zhu-Hong You

Keyword(s):

Fuzzy Clustering ◽

Protein Interaction ◽

Semantic Information ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks

Journal of Intelligent & Fuzzy Systems ◽

10.3233/jifs-17026 ◽

2018 ◽

Vol 34 (1) ◽

pp. 93-103 ◽

Author(s):

Buwen Cao ◽

Shuguang Deng ◽

Jiawei Luo ◽

Pingjian Ding ◽

Shulin Wang

Keyword(s):

Protein Interaction ◽

Clustering Algorithm ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Yeast Protein ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Protein complex detection with semi-supervised learning in protein interaction networks

Proteome Science ◽

10.1186/1477-5956-9-s1-s5 ◽

2011 ◽

Vol 9 (Suppl 1) ◽

pp. S5 ◽

Author(s):

Lei Shi ◽

Xiujuan Lei ◽

Aidong Zhang

Keyword(s):

Supervised Learning ◽

Protein Interaction ◽

Protein Complex ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Complex Detection ◽

Complex Detection

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Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks

BMC Bioinformatics ◽

10.1186/s12859-018-2364-2 ◽

2018 ◽

Vol 19 (1) ◽

Author(s):

Xiaoxia Liu ◽

Zhihao Yang ◽

Shengtian Sang ◽

Ziwei Zhou ◽

Lei Wang ◽

...

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Node Embeddings

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A Core-Attachment Algorithm Based on Expected-Density and GO Terms to Detect Protein Complexes in Uncertain Protein-Protein Interaction Networks

International Journal of Digital Content Technology and its Applications ◽

10.4156/jdcta.vol7.issue8.6 ◽

2013 ◽

Vol 7 (8) ◽

pp. 49-57

Author(s):

Jiawei Luo ◽

Weifeng Hu

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks ◽

Go Terms ◽

Expected Density

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PCE-FR: A Novel Method for Identifying Overlapping Protein Complexes in Weighted Protein-Protein Interaction Networks Using Pseudo-Clique Extension Based on Fuzzy Relation

IEEE Transactions on NanoBioscience ◽

10.1109/tnb.2016.2611683 ◽

2016 ◽

Vol 15 (7) ◽

pp. 728-738 ◽

Author(s):

Buwen Cao ◽

Jiawei Luo ◽

Cheng Liang ◽

Shulin Wang ◽

Pingjian Ding

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Fuzzy Relation ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Novel Method ◽

Protein Protein Interaction Networks

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Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy

10.1002/pmic.201200336 ◽

2012 ◽

Vol 13 (2) ◽

pp. 269-277 ◽

Author(s):

Bolin Chen ◽

Jinhong Shi ◽

Shenggui Zhang ◽

Fang-Xiang Wu

Keyword(s):

Protein Interaction ◽

Protein Complexes ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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