A novel 3D graphical representation of RNA secondary structures based on chaos game representation

Author(s):  
Qianjun Xiao ◽  
Jinyu Zhou ◽  
Long Shi
Fractals ◽  
2006 ◽  
Vol 14 (02) ◽  
pp. 87-99 ◽  
Author(s):  
J. M. GUTIÉRREZ ◽  
A. GALVÁN ◽  
A. S. COFIÑO ◽  
C. PRIMO

We present an application of the fractal "chaos game representation" method in climatology for characterizing temporal precipitation aggregation patterns. To this aim, we establish an analogy with linguistic analysis considering precipitation as a discrete variable (e.g. rain, no rain). Each weekly, or monthly, symbolic sequence of observed precipitation is then considered a "word" and the climatological time series observed at a particular gauge defines a "language." The distribution of different words within the language characterizes the particular precipitation aggregation scheme. In this paper we show that the chaos game representation method provides a graphical representation (a fractal pattern, or fingerprint) of the distribution of words and also gives a quantitative characterization in terms of parameters such as the box-counting dimension and the entropy. We show that different climates exhibit characteristic patterns with different fractal exponents and entropies. As an illustrative application, the method is used for automatic regionalization of a set of gauges in the Iberian peninsula, showing that these new indices outperform standard averaged statistics (monthly means, etc.).


Author(s):  
Peggy Cénac

In this paper biological sequences are modelled by stationary ergodic sequences. A new family of statistical tests to characterize the randomness of the inputs is proposed and analyzed. Tests for independence and for the determination of the appropriate order of a Markov chain are constructed with the Chaos Game Representation (CGR), and applied to several genomes.


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