scholarly journals Testing Atmospheric Oxidation in an Alabama Forest

2016 ◽  
Vol 73 (12) ◽  
pp. 4699-4710 ◽  
Author(s):  
Philip A. Feiner ◽  
William H. Brune ◽  
David O. Miller ◽  
Li Zhang ◽  
Ronald C. Cohen ◽  
...  
Keyword(s):  
Current Model ◽  
Chemical Species ◽  
Chemical Mechanism ◽  
Atmospheric Oxidation ◽  
Good Test ◽  
Chemical Mechanisms ◽  
Volatile Organic ◽  
Master Chemical Mechanism ◽  
The Difference ◽  
Oxidation Chemistry

Abstract The chemical species emitted by forests create complex atmospheric oxidation chemistry and influence global atmospheric oxidation capacity and climate. The Southern Oxidant and Aerosol Study (SOAS) provided an opportunity to test the oxidation chemistry in a forest where isoprene is the dominant biogenic volatile organic compound. Hydroxyl (OH) and hydroperoxyl (HO2) radicals were two of the hundreds of atmospheric chemical species measured, as was OH reactivity (the inverse of the OH lifetime). OH was measured by laser-induced fluorescence (LIF) and by taking the difference in signals without and with an OH scavenger that was added just outside the instrument’s pinhole inlet. To test whether the chemistry at SOAS can be simulated by current model mechanisms, OH and HO2 were evaluated with a box model using two chemical mechanisms: Master Chemical Mechanism, version 3.2 (MCMv3.2), augmented with explicit isoprene chemistry and MCMv3.3.1. Measured and modeled OH peak at about 106 cm−3 and agree well within combined uncertainties. Measured and modeled HO2 peak at about 27 pptv and also agree well within combined uncertainties. Median OH reactivity cycled between about 11 s−1 at dawn and about 26 s−1 during midafternoon. A good test of the oxidation chemistry is the balance between OH production and loss rates using measurements; this balance was observed to within uncertainties. These SOAS results provide strong evidence that the current isoprene mechanisms are consistent with measured OH and HO2 and, thus, capture significant aspects of the atmospheric oxidation chemistry in this isoprene-rich forest.

scholarly journals The community atmospheric chemistry box model CAABA/MECCA-4.0

2019 ◽  
Vol 12 (4) ◽  
pp. 1365-1385 ◽  
Author(s):  
Rolf Sander ◽  
Andreas Baumgaertner ◽  
David Cabrera-Perez ◽  
Franziska Frank ◽  
Sergey Gromov ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Box Model ◽  
Chemical Mechanism ◽  
Chemical Mechanisms ◽  
Community Model ◽  
Volatile Organic ◽  
Master Chemical Mechanism ◽  
New Feature ◽  
User Friendly ◽  
Skeletal Mechanism

Abstract. We present version 4.0 of the atmospheric chemistry box model CAABA/MECCA that now includes a number of new features: (i) skeletal mechanism reduction, (ii) the Mainz Organic Mechanism (MOM) chemical mechanism for volatile organic compounds, (iii) an option to include reactions from the Master Chemical Mechanism (MCM) and other chemical mechanisms, (iv) updated isotope tagging, and (v) improved and new photolysis modules (JVAL, RADJIMT, DISSOC). Further, when MECCA is connected to a global model, the new feature of coexisting multiple chemistry mechanisms (PolyMECCA/CHEMGLUE) can be used. Additional changes have been implemented to make the code more user-friendly and to facilitate the analysis of the model results. Like earlier versions, CAABA/MECCA-4.0 is a community model published under the GNU General Public License.

scholarly journals Atmospheric oxidation in the presence of clouds during the Deep Convective Clouds and Chemistry (DC3) study

2018 ◽  
Vol 18 (19) ◽  
pp. 14493-14510 ◽  
Author(s):  
William H. Brune ◽  
Xinrong Ren ◽  
Li Zhang ◽  
Jingqiu Mao ◽  
David O. Miller ◽  
...  
Keyword(s):  
Chemical Species ◽  
Mesoscale Convective System ◽  
Chemical Mechanism ◽  
Ozone Production ◽  
Atmospheric Oxidation ◽  
Convective System ◽  
Heterogeneous Chemistry ◽  
Convective Clouds ◽  
Deep Convective Clouds ◽  
Oxidation Chemistry

Abstract. Deep convective clouds are critically important to the distribution of atmospheric constituents throughout the troposphere but are difficult environments to study. The Deep Convective Clouds and Chemistry (DC3) study in 2012 provided the environment, platforms, and instrumentation to test oxidation chemistry around deep convective clouds and their impacts downwind. Measurements on the NASA DC-8 aircraft included those of the radicals hydroxyl (OH) and hydroperoxyl (HO2), OH reactivity, and more than 100 other chemical species and atmospheric properties. OH, HO2, and OH reactivity were compared to photochemical models, some with and some without simplified heterogeneous chemistry, to test the understanding of atmospheric oxidation as encoded in the model. In general, the agreement between the observed and modeled OH, HO2, and OH reactivity was within the combined uncertainties for the model without heterogeneous chemistry and the model including heterogeneous chemistry with small OH and HO2 uptake consistent with laboratory studies. This agreement is generally independent of the altitude, ozone photolysis rate, nitric oxide and ozone abundances, modeled OH reactivity, and aerosol and ice surface area. For a sunrise to midday flight downwind of a nighttime mesoscale convective system, the observed ozone increase is consistent with the calculated ozone production rate. Even with some observed-to-modeled discrepancies, these results provide evidence that a current measurement-constrained photochemical model can simulate observed atmospheric oxidation processes to within combined uncertainties, even around convective clouds. For this DC3 study, reduction in the combined uncertainties would be needed to confidently unmask errors or omissions in the model chemical mechanism.

scholarly journals The atmospheric chemistry box model CAABA/MECCA-4.0gmdd

2018 ◽  
Author(s):  
Rolf Sander ◽  
Andreas Baumgaertner ◽  
David Cabrera ◽  
Franziska Frank ◽  
Jens-Uwe Grooß ◽  
...  
Keyword(s):  
Atmospheric Chemistry ◽  
Box Model ◽  
Chemical Mechanism ◽  
Chemical Mechanisms ◽  
Community Model ◽  
Volatile Organic ◽  
Master Chemical Mechanism ◽  
New Feature ◽  
User Friendly ◽  
Skeletal Mechanism

Abstract. We present version 4.0gmdd of the atmospheric chemistry box model CAABA/MECCA which now includes a number of new features: (i) skeletal mechanism reduction, (ii) the MOM chemical mechanism for volatile organic compounds, (iii) an option to include reactions from the Master Chemical Mechanism (MCM) and other chemical mechanisms, (iv) updated isotope tagging, and (v) improved and new photolysis modules (JVAL, RADJIMT, DISSOC). Further, when MECCA is connected to a global model, the new feature of coexisting multiple chemistry mechanisms (PolyMECCA/CHEMGLUE) can be used. Additional changes have been implemented to make the code more user-friendly and to facilitate the analysis of the model results. Like earlier versions, CAABA/MECCA-4.0gmdd is a community model published under the GNU General Public License.

scholarly journals Yields of oxidized volatile organic compounds during the OH radical initiated oxidation of isoprene, methyl vinyl ketone, and methacrolein under high-NO<sub>x</sub> conditions

2011 ◽  
Vol 11 (21) ◽  
pp. 10779-10790 ◽  
Author(s):  
M. M. Galloway ◽  
A. J. Huisman ◽  
L. D. Yee ◽  
A. W. H. Chan ◽  
C. L. Loza ◽  
...  
Keyword(s):  
Secondary Production ◽  
First Generation ◽  
Vinyl Ketone ◽  
Methyl Vinyl Ketone ◽  
Chemical Mechanism ◽  
Total Production ◽  
Production Term ◽  
Methyl Vinyl ◽  
Chemical Mechanisms ◽  
Master Chemical Mechanism

Abstract. We present first-generation and total production yields of glyoxal, methylglyoxal, glycolaldehyde, and hydroxyacetone from the oxidation of isoprene, methyl vinyl ketone (MVK), and methacrolein (MACR) with OH under high NOx conditions. Several of these first-generation yields are not included in commonly used chemical mechanisms, such as the Leeds Master Chemical Mechanism (MCM) v. 3.2. The first-generation yield of glyoxal from isoprene was determined to be 2.1 (±0.6)%. Inclusion of first-generation production of glyoxal, glycolaldehyde and hydroxyacetone from isoprene greatly improves performance of an MCM based model during the initial part of the experiments. In order to further improve performance of the MCM based model, higher generation glyoxal production was reduced by lowering the first-generation yield of glyoxal from C5 hydroxycarbonyls. The results suggest that glyoxal production from reaction of OH with isoprene under high NOx conditions can be approximated by inclusion of a first-generation production term together with secondary production only via glycolaldehyde. Analogously, methylglyoxal production can be approximated by a first-generation production term from isoprene, and secondary production via MVK, MACR and hydroxyacetone. The first-generation yields reported here correspond to less than 5% of the total oxidized yield from isoprene and thus only have a small effect on the fate of isoprene. However, due to the abundance of isoprene, the combination of first-generation yields and reduced higher generation production of glyoxal from C5 hydroxycarbonyls is important for models that include the production of the small organic molecules from isoprene.

scholarly journals Protocol for the development of the Master Chemical Mechanism, MCM v3 (Part A): tropospheric degradation of non-aromatic volatile organic compounds

2002 ◽  
Vol 2 (6) ◽  
pp. 1847-1903 ◽  
Author(s):  
S. M. Saunders ◽  
M. E. Jenkin ◽  
R. G. Derwent ◽  
M. J. Pilling
Keyword(s):  
Volatile Organic Compounds ◽  
Organic Compounds ◽  
Good Description ◽  
Field Studies ◽  
Companion Paper ◽  
Chemical Mechanism ◽  
North West ◽  
Radical Intermediates ◽  
Volatile Organic ◽  
Master Chemical Mechanism

Abstract. Kinetic and mechanistic data relevant to the tropospheric degradation of volatile organic compounds (VOC), and the production of secondary pollutants, have previously been used to define a protocol which underpinned the construction of a near-explicit Master Chemical Mechanism. In this paper, an update to the previous protocol is presented, which has been used to define degradation schemes for 107 non-aromatic VOC as part of version 3 of the Master Chemical Mechanism (MCM v3). The treatment of 18 aromatic VOC is described in a companion paper. The protocol is divided into a series of subsections describing initiation reactions, the reactions of the radical intermediates and the further degradation of first and subsequent generation products. Emphasis is placed on updating the previous information, and outlining the methodology which is specifically applicable to VOC not considered previously (e.g. a- and b-pinene). The present protocol aims to take into consideration work available in the open literature up to the beginning of 2001, and some other studies known by the authors which were under review at the time. Application of MCM v3 in appropriate box models indicates that the representation of isoprene degradation provides a good description of the speciated distribution of oxygenated organic products observed in reported field studies where isoprene was the dominant emitted hydrocarbon, and that the a-pinene degradation chemistry provides a good description of the time dependence of key gas phase species in a-pinene/NOX photo-oxidation experiments carried out in the European Photoreactor (EUPHORE). Photochemical Ozone Creation Potentials (POCP) have been calculated for the 106 non-aromatic non-methane VOC in MCM v3 for idealised conditions appropriate to north-west Europe, using a photochemical trajectory model. The POCP values provide a measure of the relative ozone forming abilities of the VOC. Where applicable, the values are compared with those calculated with previous versions of the MCM.

scholarly journals Atmospheric OH reactivity in central London: observations, model predictions and estimates of in situ ozone production

2015 ◽  
Vol 15 (21) ◽  
pp. 31247-31286
Author(s):  
L. K. Whalley ◽  
D. Stone ◽  
B. Bandy ◽  
R. Dunmore ◽  
J. F. Hamilton ◽  
...  
Keyword(s):  
Degradation Mechanism ◽  
Oxidation Products ◽  
Chemical Mechanism ◽  
Ozone Production ◽  
Two Dimensional ◽  
Diurnal Profile ◽  
Biogenic Compounds ◽  
Master Chemical Mechanism ◽  
The Difference

Abstract. Near-continuous measurements of OH reactivity in the urban background atmosphere of central London during the summer of 2012 are presented. OH reactivity behaviour is seen to be broadly dependent on airmass origin with the highest reactivity and the most pronounced diurnal profile observed when air had passed over central London to the East, prior to measurement. Averaged over the entire observation period of 26 days, OH reactivity peaked at ~ 27 s−1 in the morning with a minimum of ~ 15 s−1 during the afternoon. A maximum OH reactivity of 116 s−1 was recorded on one day during morning rush hour. A detailed box model using the Master Chemical Mechanism was used to calculate OH reactivity, and was constrained with an extended measurement dataset of volatile organic compounds (VOCs) derived from GC-FID and a two-dimensional GC instrument which included heavier molecular weight (up to C12) aliphatic VOCs, oxygenated VOCs and the biogenic VOCs of α pinene and limonene. Comparison was made between observed OH reactivity and modelled OH reactivity using (i) a standard suite of VOC measurements (C2-C8 hydrocarbons and a small selection of oxygenated VOCs) and (ii) a more comprehensive inventory including species up to C12. Modelled reactivities were lower than those measured (by 33 %) when only the reactivity of the standard VOC suite was considered. The difference between measured and modelled reactivity was improved, to within 15 %, if the reactivity of the higher VOCs (&amp;geq; C9) was also considered, with the reactivity of the biogenic compounds of α pinene and limonene and their oxidation products almost entirely responsible for this improvement. Further improvements in the model's ability to reproduce OH reactivity (to within 6 %) could be achieved if the reactivity and degradation mechanism of unassigned two-dimensional GC peaks were estimated. Neglecting the contribution of the higher VOCs (&amp;geq; C9) (particularly α pinene and limonene) and model-generated intermediates worsened the agreement between modelled and observed OH concentrations (by 41 %) and the magnitude of in situ ozone production calculated from the production of RO2 was significantly lower (60 %). This work highlights that any future ozone abatement strategies should consider the role that biogenic emissions play alongside anthropogenic emissions in influencing London's air quality.

scholarly journals Yields of oxidized volatile organic compounds during the OH radical initiated oxidation of isoprene, methyl vinyl ketone, and methacrolein under high–NO<sub>x</sub> conditions

2011 ◽  
Vol 11 (4) ◽  
pp. 10693-10720 ◽  
Author(s):  
M. M. Galloway ◽  
A. J. Huisman ◽  
L. D. Yee ◽  
A. W. H. Chan ◽  
C. L. Loza ◽  
...  
Keyword(s):  
Secondary Production ◽  
First Generation ◽  
Vinyl Ketone ◽  
Methyl Vinyl Ketone ◽  
Chemical Mechanism ◽  
Total Production ◽  
Production Term ◽  
Methyl Vinyl ◽  
Chemical Mechanisms ◽  
Master Chemical Mechanism

Abstract. We present first-generation and total production yields of glyoxal, methylglyoxal, glycolaldehyde, and hydroxyacetone from the oxidation of isoprene, methyl vinyl ketone (MVK), and methacrolein (MACR) with OH under high NOx conditions. Several of these first-generation yields are not included in commonly used chemical mechanisms, such as the Leeds Master Chemical Mechanism (MCM) v. 3.1. Inclusion of first-generation production of glyoxal, glycolaldehyde and hydroxyacetone from isoprene and methylglyoxal from MACR greatly improves performance of an MCM based model during the initial part of the experiments. In order to further improve performance of the MCM based model, higher generation glyoxal production was reduced by lowering the first-generation yield of glyoxal from C5 carbonyls. The results suggest that glyoxal production from reaction of OH with isoprene under high NOx conditions can be approximated by inclusion of a first-generation production term together with secondary production only via glycolaldehyde. Analogously, methylglyoxal production can be approximated by a first-generation production term from isoprene, and secondary production via MVK, MACR and hydroxyacetone. The first-generation yields reported here correspond to less than 5% of the total oxidized yield from isoprene and thus only have a small effect on the fate of isoprene. However, due to the abundance of isoprene, the combination of first-generation yields and reduced higher generation production of glyoxal from C5 carbonyls is important for models which include the production of the small organic molecules from isoprene.

scholarly journals Missing OH reactivity in the global marine boundary layer

2020 ◽  
Vol 20 (6) ◽  
pp. 4013-4029 ◽  
Author(s):  
Alexander B. Thames ◽  
William H. Brune ◽  
David O. Miller ◽  
Hannah M. Allen ◽  
Eric C. Apel ◽  
...  
Keyword(s):  
Boundary Layer ◽  
Volatile Organic Compounds ◽  
Organic Compounds ◽  
Dimethyl Sulfide ◽  
Marine Boundary Layer ◽  
Limit Of Detection ◽  
Chemical Species ◽  
Volatile Organic ◽  
The Mean ◽  
The Difference

Abstract. The hydroxyl radical (OH) reacts with thousands of chemical species in the atmosphere, initiating their removal and the chemical reaction sequences that produce ozone, secondary aerosols, and gas-phase acids. OH reactivity, which is the inverse of OH lifetime, influences the OH abundance and the ability of OH to cleanse the atmosphere. The NASA Atmospheric Tomography (ATom) campaign used instruments on the NASA DC-8 aircraft to measure OH reactivity and more than 100 trace chemical species. ATom presented a unique opportunity to test the completeness of the OH reactivity calculated from the chemical species measurements by comparing it to the measured OH reactivity over two oceans across four seasons. Although the calculated OH reactivity was below the limit of detection for the ATom instrument used to measure OH reactivity throughout much of the free troposphere, the instrument was able to measure the OH reactivity in and just above the marine boundary layer. The mean measured value of OH reactivity in the marine boundary layer across all latitudes and all ATom deployments was 1.9 s−1, which is 0.5 s−1 larger than the mean calculated OH reactivity. The missing OH reactivity, the difference between the measured and calculated OH reactivity, varied between 0 and 3.5 s−1, with the highest values over the Northern Hemisphere Pacific Ocean. Correlations of missing OH reactivity with formaldehyde, dimethyl sulfide, butanal, and sea surface temperature suggest the presence of unmeasured or unknown volatile organic compounds or oxygenated volatile organic compounds associated with ocean emissions.

scholarly journals Missing OH Reactivity in the Global Marine Boundary Layer

2019 ◽  
Author(s):  
Alexander B. Thames ◽  
William H. Brune ◽  
David O. Miller ◽  
Hannah M. Allen ◽  
Eric C. Apel ◽  
...  
Keyword(s):  
Boundary Layer ◽  
Volatile Organic Compounds ◽  
Organic Compounds ◽  
Dimethyl Sulfide ◽  
Marine Boundary Layer ◽  
Limit Of Detection ◽  
Chemical Species ◽  
Four Seasons ◽  
Volatile Organic ◽  
The Difference

Abstract. The hydroxyl radical (OH) reacts with thousands of chemical species in the atmosphere, initiating their removal and the chemical reaction sequences that produce ozone, secondary aerosols, and gas-phase acids. OH reactivity, which is the inverse of OH lifetime, influences the OH abundance and the ability of OH to cleanse the atmosphere. The NASA Atmospheric Tomography (ATom) campaign used instruments on the NASA DC-8 aircraft to measure OH reactivity and more than 100 trace chemical species. ATom presented a unique opportunity to test the completeness of the OH reactivity calculated from the chemical species measurements by comparing it to the measured OH reactivity over two oceans across four seasons. Although the calculated OH reactivity was below the OH reactivity instrument's limit-of-detection for much of the free troposphere, the OHR instrument was able to measure the OH reactivity in and just above the marine boundary layer. The average measured value of OH reactivity in the marine boundary layer across all latitudes and all ATom phases was 1.9 s−1, which 0.5 s−1 larger than the average calculated OH reactivity. Concurrently, missing OH reactivity, the difference between the measured and calculated OH reactivity, was measured to be ~ 0.5–2.0 s−1 at some locations in the tropics and midlatitudes. Correlations of missing OH reactivity with formaldehyde, dimethyl sulfide, butanal, and sea surface temperature suggest the presence of unmeasured or unknown volatile organic compounds or oxygenated volatile organic compounds associated with ocean emissions.

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