Community analysis of preservative-treated southern pine (Pinus spp.) using terminal restriction fragment length polymorphism (T-RFLP) analysis. Part 2: Bacteria field study

Holzforschung ◽  
2012 ◽  
Vol 66 (4) ◽  
Author(s):  
Grant T. Kirker ◽  
M. Lynn Prewitt ◽  
Walter J. Diehl ◽  
Susan V. Diehl

Abstract The effects of wood preservatives on the bacterial community in southern yellow pine were assessed by the molecular method ‘terminal restriction fragment length polymorphism’ (T-RFLP). Stakes, treated with 0.25% and 0.37% ammoniacal copper quat (ACQ-C), 0.1% and 0.25% chlorothalonil (CTN), 0.1% and 0.25% CTN with 2% butylated hydroxytoluene (BHT), and 2% BHT were installed with untreated controls in two field test sites in Mississippi and sampled every 90 days. Bacterial DNA was amplified by means of general 16S rDNA primers. Community data were analyzed to determine the effects of test site, exposure (above or below ground), treatment concentrations, and exposure time on the bacterial communities inhabiting the field stakes. Wood preservatives altered the bacterial communities, which fluctuated in numbers and composition over time. Initial exposure to CTN changed the pattern of species that colonized the stakes, and the bacterial communities did not become more similar to controls after CTN depletion. Bacterial communities on untreated controls were the most similar to each other and changed the least over time. Preservative treatment led to greater population turnover and increased diversity by creating a more unstable bacterial environment, which prevented these communities from reaching equilibrium. Although preservative treatment led to changes over time, there were still many shared species within and between the untreated controls and the different preservative treatments.

Holzforschung ◽  
2012 ◽  
Vol 66 (4) ◽  
Author(s):  
Grant T. Kirker ◽  
M. Lynn Prewitt ◽  
Tor P. Schultz ◽  
Susan V. Diehl

AbstractThe effects of chlorothalonil (CTN), butylated hydroxytoluene (BHT), and ammoniacal copper quat (ACQ-C) on the fungal community on southern yellow pine (SYP) were assessed using terminal restriction fragment length polymorphism (T-RFLP) analysis over 15 months. Field stakes, treated with 0.25 and 0.37% ACQ-C, 0.1 and 0.25% CTN, 2% BHT alone, 0.1 and 0.25% CTN combined with 2% BHT, and untreated controls, were installed in two field sites in Mississippi. Stakes were sampled at 90-day intervals and rated for decay damage. Fungal DNA was extracted and amplified by non-specific (total fungi) and specific (Basidiomycete) primers and processes for T-RFLP. a-Diversity (richness and diversity) and b-diversity (similarity between communities) were calculated by means of T-RFLP data. The presence of wood preservatives slowed the initial colonization of field stakes by total fungi, resulting in lower richness and diversity that increased over time; however, preservatives increased the richness and diversity of Basidiomycetes. The b-diversity of treated samples was less similar in the early stages of exposure (3–9 months), but coalesced over time into equilibrium communities that were similar to communities on untreated controls. Basidiomycete species compositions were different among treated samples while control communities shared more than 75% of their species. Correlations were found between depletion of 0.1% CTN and increasing fungal diversity, but no other significant correlations were found.


2011 ◽  
Vol 77 (12) ◽  
pp. 4249-4252 ◽  
Author(s):  
Alexandra A. Mushegian ◽  
Celeste N. Peterson ◽  
Christopher C. M. Baker ◽  
Anne Pringle

ABSTRACTSymbioses are unique habitats for bacteria. We surveyed the spatial diversity of bacterial communities across multiple individuals of closely related lichens using terminal restriction fragment length polymorphism (T-RFLP) and pyrosequencing. Centers of lichens house richer, more consistent assemblages than species-poor and compositionally disparate lichen edges, suggesting that ecological succession plays a role in structuring these communities.


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