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A Combined Approach for de novo DNA Sequence Assembly of Very Short Reads
IPSJ Transactions on Bioinformatics
◽
10.2197/ipsjtbio.4.21
◽
2011
◽
Vol 4
◽
pp. 21-33
◽
Cited By ~ 2
Author(s):
Wisnu Ananta Kusuma
◽
Takashi Ishida
◽
Yutaka Akiyama
Keyword(s):
Dna Sequence
◽
De Novo
◽
Sequence Assembly
◽
Combined Approach
◽
Short Reads
◽
Dna Sequence Assembly
Download Full-text
Related Documents
Cited By
References
Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species
PeerJ
◽
10.7717/peerj.895
◽
2015
◽
Vol 3
◽
pp. e895
◽
Cited By ~ 43
Author(s):
Michael G. Harvey
◽
Caroline Duffie Judy
◽
Glenn F. Seeholzer
◽
James M. Maley
◽
Gary R. Graves
◽
...
Keyword(s):
Dna Sequence
◽
Sequence Assembly
◽
Short Reads
◽
Dna Sequence Assembly
◽
Similarity Thresholds
Download Full-text
Characterizing and optimizing the memory footprint of de novo short read DNA sequence assembly
2009 IEEE International Symposium on Performance Analysis of Systems and Software
◽
10.1109/ispass.2009.4919646
◽
2009
◽
Cited By ~ 4
Author(s):
Jeffrey J. Cook
◽
Craig Zilles
Keyword(s):
Dna Sequence
◽
De Novo
◽
Sequence Assembly
◽
Short Read
◽
Dna Sequence Assembly
◽
Memory Footprint
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Iterative Learning for Reference-Guided DNA Sequence Assembly From Short Reads: Algorithms and Limits of Performance
IEEE Transactions on Signal Processing
◽
10.1109/tsp.2014.2333564
◽
2014
◽
Vol 62
(17)
◽
pp. 4425-4435
Author(s):
Xiaohu Shen
◽
Manohar Shamaiah
◽
Haris Vikalo
Keyword(s):
Dna Sequence
◽
Sequence Assembly
◽
Iterative Learning
◽
Short Reads
◽
Dna Sequence Assembly
Download Full-text
Towards hardware-accelerated suffix array construction architecture for the de novo DNA sequence assembly
2016 18th Mediterranean Electrotechnical Conference (MELECON)
◽
10.1109/melcon.2016.7495406
◽
2016
◽
Author(s):
Agathoklis Papadopoulos
◽
Manolis Christodoulakis
◽
Theocharis Theocharides
Keyword(s):
Dna Sequence
◽
De Novo
◽
Sequence Assembly
◽
Suffix Array
◽
Dna Sequence Assembly
Download Full-text
Peer Review #1 of "Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species (v0.1)"
10.7287/peerj.895v0.1/reviews/1
◽
2015
◽
Author(s):
RC Garrick
Keyword(s):
Peer Review
◽
Dna Sequence
◽
Sequence Assembly
◽
Short Reads
◽
Dna Sequence Assembly
◽
Similarity Thresholds
Download Full-text
Peer Review #2 of "Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species (v0.1)"
10.7287/peerj.895v0.1/reviews/2
◽
2015
◽
Author(s):
M Popp
Keyword(s):
Peer Review
◽
Dna Sequence
◽
Sequence Assembly
◽
Short Reads
◽
Dna Sequence Assembly
◽
Similarity Thresholds
Download Full-text
Proposal of a New Method for de Novo DNA Sequence Assembly Using de Bruijn Graphs
Lecture Notes in Electrical Engineering - Information Sciences and Systems 2015
◽
10.1007/978-3-319-22635-4_28
◽
2015
◽
pp. 307-317
Author(s):
Adriano Donato Couto
◽
Fabio Ribeiro Cerqueira
◽
Ricardo dos Santos Ferreira
◽
Alcione de Paiva Oliveira
Keyword(s):
Dna Sequence
◽
De Novo
◽
Sequence Assembly
◽
New Method
◽
De Bruijn Graphs
◽
Dna Sequence Assembly
◽
De Bruijn
Download Full-text
An integer programming approach to DNA sequence assembly
Computational Biology and Chemistry
◽
10.1016/j.compbiolchem.2011.06.001
◽
2011
◽
Vol 35
(4)
◽
pp. 251-258
◽
Cited By ~ 3
Author(s):
YoungJung Chang
◽
Nikolaos V. Sahinidis
Keyword(s):
Integer Programming
◽
Dna Sequence
◽
Sequence Assembly
◽
Programming Approach
◽
Dna Sequence Assembly
Download Full-text
DNA sequence assembly
IEEE Engineering in Medicine and Biology Magazine
◽
10.1109/51.334645
◽
1994
◽
Vol 13
(5)
◽
pp. 771-773
◽
Cited By ~ 3
Author(s):
C. Burks
Keyword(s):
Dna Sequence
◽
Sequence Assembly
◽
Dna Sequence Assembly
Download Full-text
A new DNA sequence assembly program
Nucleic Acids Research
◽
10.1093/nar/23.24.4992
◽
1995
◽
Vol 23
(24)
◽
pp. 4992-4999
◽
Cited By ~ 600
Author(s):
James K. Bonfield
◽
Kathryn F. Smith
◽
Rodger Staden
Keyword(s):
Dna Sequence
◽
Sequence Assembly
◽
Dna Sequence Assembly
Download Full-text
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