Towards hardware-accelerated suffix array construction architecture for the de novo DNA sequence assembly

2016 ◽  
Author(s):  
Agathoklis Papadopoulos ◽  
Manolis Christodoulakis ◽  
Theocharis Theocharides
Keyword(s):  
Dna Sequence ◽  
De Novo ◽  
Sequence Assembly ◽  
Suffix Array ◽  
Dna Sequence Assembly

scholarly journals A Combined Approach for de novo DNA Sequence Assembly of Very Short Reads

2011 ◽  
Vol 4 ◽  
pp. 21-33 ◽  
Author(s):  
Wisnu Ananta Kusuma ◽  
Takashi Ishida ◽  
Yutaka Akiyama
Keyword(s):  
Dna Sequence ◽  
De Novo ◽  
Sequence Assembly ◽  
Combined Approach ◽  
Short Reads ◽  
Dna Sequence Assembly

Proposal of a New Method for de Novo DNA Sequence Assembly Using de Bruijn Graphs

2015 ◽  
pp. 307-317
Author(s):  
Adriano Donato Couto ◽  
Fabio Ribeiro Cerqueira ◽  
Ricardo dos Santos Ferreira ◽  
Alcione de Paiva Oliveira
Keyword(s):  
Dna Sequence ◽  
De Novo ◽  
Sequence Assembly ◽  
New Method ◽  
De Bruijn Graphs ◽  
Dna Sequence Assembly ◽  
De Bruijn

scholarly journals A new DNA sequence assembly program

1995 ◽  
Vol 23 (24) ◽  
pp. 4992-4999 ◽  
Author(s):  
James K. Bonfield ◽  
Kathryn F. Smith ◽  
Rodger Staden
Keyword(s):  
Dna Sequence ◽  
Sequence Assembly ◽  
Dna Sequence Assembly

scholarly journals Similarity thresholds used in DNA sequence assembly from short reads can reduce the comparability of population histories across species

PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e895 ◽  
Author(s):  
Michael G. Harvey ◽  
Caroline Duffie Judy ◽  
Glenn F. Seeholzer ◽  
James M. Maley ◽  
Gary R. Graves ◽  
...  
Keyword(s):  
Dna Sequence ◽  
Sequence Assembly ◽  
Short Reads ◽  
Dna Sequence Assembly ◽  
Similarity Thresholds
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