scholarly journals NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data

2018 ◽  
Vol 12 ◽  
Author(s):  
Jason S. Rothman ◽  
R. Angus Silver
Computer ◽  
2006 ◽  
Vol 39 (4) ◽  
pp. 46-53 ◽  
Author(s):  
K. Gary ◽  
L. Ibanez ◽  
S. Aylward ◽  
D. Gobbi ◽  
M.B. Blake ◽  
...  

2011 ◽  
Vol 2011 ◽  
pp. 1-9 ◽  
Author(s):  
Robert Oostenveld ◽  
Pascal Fries ◽  
Eric Maris ◽  
Jan-Mathijs Schoffelen

This paper describes FieldTrip, an open source software package that we developed for the analysis of MEG, EEG, and other electrophysiological data. The software is implemented as a MATLAB toolbox and includes a complete set of consistent and user-friendly high-level functions that allow experimental neuroscientists to analyze experimental data. It includes algorithms for simple and advanced analysis, such as time-frequency analysis using multitapers, source reconstruction using dipoles, distributed sources and beamformers, connectivity analysis, and nonparametric statistical permutation tests at the channel and source level. The implementation as toolbox allows the user to perform elaborate and structured analyses of large data sets using the MATLAB command line and batch scripting. Furthermore, users and developers can easily extend the functionality and implement new algorithms. The modular design facilitates the reuse in other software packages.


2005 ◽  
Author(s):  
Luis Ibanez ◽  
Julien Jomier ◽  
David Gobbi ◽  
Rick Avila ◽  
M. brian Blake ◽  
...  

The Image-Guided Surgery Toolkit (IGSTK) is an Open Source software project being developed under NIH/NIBIB funding. The toolkit will provide a common platform for implementing image-guided surgery applications and for fostering research in the field. The toolkit is based on several other open source toolkits including ITK, VTK and FLTK. Its architecture is based on the use of medium size classes, each one of them containing an explicit State Machine and a minimized API that enforces fault tolerance by design. This paper describes the architecture and its rationale.


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